(53 nodes) Phosphorelay signal transduction system, and Diguanylate cyclase network (Acinetobacter baumannii BJAB07104)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AGQ12670.1	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204. (473 aa)
	AGQ12671.1	Signal transduction histidine kinase; COG:COG0642. (507 aa)
	sirA	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; COG:COG2197. (211 aa)
	AGQ12673.1	D-alanyl-D-alanine carboxypeptidase; COG:COG1686; Belongs to the peptidase S11 family. (335 aa)
	AGQ12969.1	EAL domain protein; COG:COG2200. (684 aa)
	gacS	Signal transduction histidine kinase; COG:COG0642. (935 aa)
	AGQ13045.1	DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein; COG:COG1508. (482 aa)
	bfmR	Two-component regulatory system response regulator; COG:COG0745. (238 aa)
	bfmS	Signal transduction histidine kinase; COG:COG0642. (530 aa)
	AGQ13127.1	Response regulator containing a CheY-like receiver domain and a GGDEF domain; COG:COG3706. (473 aa)
	AGQ13658.1	GGDEF domain protein; COG:COG2199. (420 aa)
	AGQ13782.1	EAL domain protein; COG:COG2200. (395 aa)
	AGQ14041.1	Putative signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG:COG5001. (697 aa)
	adeS	Signal transduction histidine kinase; COG:COG0642. (357 aa)
	adeR	Efflux system DNA-binding response regulator AdeR; COG:COG0745. (247 aa)
	cph2_4	GGDEF domain protein; COG:COG2199. (409 aa)
	AGQ14693.1	DNA-binding response regulator; COG:COG0745. (319 aa)
	AGQ14694.1	Signal transduction histidine kinase; COG:COG0642. (1151 aa)
	AGQ14861.1	DNA-binding response regulator; COG:COG0745. (238 aa)
	AGQ14862.1	Osmosensitive K+ channel histidine kinase; COG:COG2205. (884 aa)
	kdpC	K+-transporting ATPase, c chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP-binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB/KdpC/ATP ternary complex. (201 aa)
	AGQ14864.1	High-affinity K+ transport system, ATPase chain B; COG:COG2216; Belongs to the cation transport ATPase (P-type) (TC 3.A.3) family. Type IA subfamily. (567 aa)
	AGQ14865.1	High-affinity K+ transport system, ATPase chain B; COG:COG2216. (119 aa)
	AGQ14866.1	K+-transporting ATPase, A chain; Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane. Belongs to the KdpA family. (569 aa)
	AGQ14869.1	Putative unusual protein kinase; COG:COG0661. (432 aa)
	AGQ14871.1	Conserved protein/domain typically associated with flavoprotein oxygenase, DIM6/NTAB family; COG:COG1853. (192 aa)
	AGQ15011.1	Signal transduction histidine kinase; COG:COG0642. (452 aa)
	AGQ15012.1	Response regulator transcription factor; COG:COG0745. (220 aa)
	AGQ15064.1	Putative signal transduction protein containing a membrane domain, an EAL and a GGDEF domain; COG:COG5001. (949 aa)
	pmrB	Signal transduction histidine kinase; COG:COG0642. (444 aa)
	pmrA	Two-component system DNA-binding response regulator; COG:COG0745. (224 aa)
	AGQ15510.1	Hypothetical protein; Similar to gene ACICU_03058 in CP000863. (154 aa)
	AGQ15511.1	Chemotaxis protein histidine kinase-related kinase; COG:COG0643. (1506 aa)
	pctA	Methyl-accepting chemotaxis protein; COG:COG0840. (692 aa)
	cheW	Chemotaxis signal transduction protein; COG:COG0835. (178 aa)
	pilH	CheY-like receiver protein; COG:COG0784. (120 aa)
	phoP	CheY-like receiver protein; COG:COG0784. (127 aa)
	AGQ15516.1	Hypothetical protein; Similar to gene ACICU_03064 in CP000863. (199 aa)
	AGQ15517.1	Membrane-fusion protein; COG:COG0845; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (372 aa)
	AGQ15518.1	Cation/multidrug efflux pump; COG:COG0841; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family. (1011 aa)
	baeR	Transcriptional regulatory protein BaeR; COG:COG0745. (228 aa)
	baeS	Signal transduction histidine kinase; COG:COG0642. (518 aa)
	AGQ15589.1	Hypothetical protein; Similar to gene ACICU_03132 in CP000863. (126 aa)
	AGQ15614.1	Signal transduction histidine kinase; COG:COG0642. (422 aa)
	AGQ15643.1	GGDEF domain protein; COG:COG2199. (366 aa)
	ompR	Two-component system response regulator protein; COG:COG0745. (254 aa)
	envZ	Signal transduction histidine kinase; COG:COG0642. (485 aa)
	AGQ15952.1	GGDEF domain protein; COG:COG2199. (568 aa)
	rpfC	Na+/proline symporter; COG:COG0591. (1165 aa)
	exaE	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; COG:COG2197. (216 aa)
	ycdT	GGDEF domain protein; COG:COG2199. (397 aa)
	phoB	Positive response regulator for the pho regulon,autophosphorylates and phosphorylates sensor PhoR; COG:COG0745. (236 aa)
	phoR	Signal transduction histidine kinase; COG:COG0642. (452 aa)

Your Current Organism:

Acinetobacter baumannii BJAB07104

NCBI taxonomy Id: 1096995
Other names: A. baumannii BJAB07104, Acinetobacter baumannii str. BJAB07104, Acinetobacter baumannii strain BJAB07104

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AGQ12670.1	AGQ12671.1	BJAB07104_00300	BJAB07104_00301	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Signal transduction histidine kinase; COG:COG0642.	0.995
AGQ12670.1	AGQ12673.1	BJAB07104_00300	BJAB07104_00303	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	D-alanyl-D-alanine carboxypeptidase; COG:COG1686; Belongs to the peptidase S11 family.	0.670
AGQ12670.1	AGQ13045.1	BJAB07104_00300	BJAB07104_00676	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein; COG:COG1508.	0.958
AGQ12670.1	AGQ14694.1	BJAB07104_00300	BJAB07104_02326	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Signal transduction histidine kinase; COG:COG0642.	0.581
AGQ12670.1	AGQ15511.1	BJAB07104_00300	BJAB07104_03143	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Chemotaxis protein histidine kinase-related kinase; COG:COG0643.	0.852
AGQ12670.1	AGQ15518.1	BJAB07104_00300	BJAB07104_03150	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Cation/multidrug efflux pump; COG:COG0841; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.	0.406
AGQ12670.1	cheW	BJAB07104_00300	BJAB07104_03145	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Chemotaxis signal transduction protein; COG:COG0835.	0.498
AGQ12670.1	envZ	BJAB07104_00300	BJAB07104_03520	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Signal transduction histidine kinase; COG:COG0642.	0.455
AGQ12670.1	gacS	BJAB07104_00300	BJAB07104_00625	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Signal transduction histidine kinase; COG:COG0642.	0.656
AGQ12670.1	pctA	BJAB07104_00300	BJAB07104_03144	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Methyl-accepting chemotaxis protein; COG:COG0840.	0.601
AGQ12670.1	phoP	BJAB07104_00300	BJAB07104_03147	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	CheY-like receiver protein; COG:COG0784.	0.509
AGQ12670.1	rpfC	BJAB07104_00300	BJAB07104_03592	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Na+/proline symporter; COG:COG0591.	0.558
AGQ12670.1	sirA	BJAB07104_00300	BJAB07104_00302	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain; COG:COG2197.	0.818
AGQ12671.1	AGQ12670.1	BJAB07104_00301	BJAB07104_00300	Signal transduction histidine kinase; COG:COG0642.	Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains; COG:COG2204.	0.995
AGQ12671.1	AGQ12673.1	BJAB07104_00301	BJAB07104_00303	Signal transduction histidine kinase; COG:COG0642.	D-alanyl-D-alanine carboxypeptidase; COG:COG1686; Belongs to the peptidase S11 family.	0.683
AGQ12671.1	AGQ13045.1	BJAB07104_00301	BJAB07104_00676	Signal transduction histidine kinase; COG:COG0642.	DNA-directed RNA polymerase specialized sigma subunit, sigma54-like protein; COG:COG1508.	0.924
AGQ12671.1	AGQ13658.1	BJAB07104_00301	BJAB07104_01290	Signal transduction histidine kinase; COG:COG0642.	GGDEF domain protein; COG:COG2199.	0.407
AGQ12671.1	AGQ14693.1	BJAB07104_00301	BJAB07104_02325	Signal transduction histidine kinase; COG:COG0642.	DNA-binding response regulator; COG:COG0745.	0.518
AGQ12671.1	AGQ14861.1	BJAB07104_00301	BJAB07104_02493	Signal transduction histidine kinase; COG:COG0642.	DNA-binding response regulator; COG:COG0745.	0.679
AGQ12671.1	AGQ15012.1	BJAB07104_00301	BJAB07104_02644	Signal transduction histidine kinase; COG:COG0642.	Response regulator transcription factor; COG:COG0745.	0.665