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| | AGQ16108.1 | Hypothetical protein; Similar to gene ACICU_03641 in CP000863. (217 aa) |
| | rpmH | Ribosomal protein L34; COG:COG0230; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | ribF | FAD synthase; COG:COG0196; Belongs to the ribF family. (333 aa) |
| | prpB | PEP phosphonomutase-related enzyme; COG:COG2513. (294 aa) |
| | fadR_1 | Hypothetical protein; Similar to gene ACICU_00195 in CP000863. (198 aa) |
| | parC | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (739 aa) |
| | novR | Ribulose-5-phosphate 4-epimerase-related epimerase and aldolase; COG:COG0235. (258 aa) |
| | AGQ12664.1 | DNA polymerase III, chi subunit; COG:COG2927. (135 aa) |
| | AGQ12689.1 | Transcriptional regulator; COG:COG1309. (193 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (168 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (123 aa) |
| | recN | ATPase involved in DNA repair; May be involved in recombinational repair of damaged DNA. (555 aa) |
| | rpsO | Ribosomal protein S15P/S13E; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | AGQ12794.1 | Primosomal protein N' (replication factor Y) - superfamily II helicase; COG:COG1198. (742 aa) |
| | AGQ12802.1 | Dehydrogenases (flavoproteins); Accepts electrons from ETF and reduces ubiquinone. (570 aa) |
| | AGQ12811.1 | Hypothetical protein; COG:COG3791. (136 aa) |
| | rpmE2 | Ribosomal protein L31; COG:COG0254. (84 aa) |
| | AGQ12864.1 | Topoisomerase IA; COG:COG0550. (878 aa) |
| | rpmG | Ribosomal protein L33; COG:COG0267; Belongs to the bacterial ribosomal protein bL33 family. (51 aa) |
| | rpmB | Ribosomal protein L28; COG:COG0227; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | AGQ12876.1 | Transcriptional regulator; COG:COG1309. (230 aa) |
| | AGQ12888.1 | Hypothetical protein; COG:COG3332. (259 aa) |
| | gntK | Gluconate kinase; COG:COG3265. (165 aa) |
| | AGQ12970.1 | Hypothetical protein; Similar to gene ACICU_00555 in CP000863. (153 aa) |
| | AGQ12971.1 | Transcriptional regulator; COG:COG1309. (190 aa) |
| | AGQ12997.1 | Putative 3'-5' exonuclease; COG:COG3298; related to the exonuclease domain of PolB. (272 aa) |
| | rpmI | Ribosomal protein L35; COG:COG0291; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa) |
| | AGQ13018.1 | Hypothetical protein; COG:COG3236. (185 aa) |
| | raiA | Ribosome-associated protein Y (PSrp-1); COG:COG1544. (112 aa) |
| | AGQ13099.1 | Hypothetical protein; Similar to gene ACICU_00680 in CP000863. (219 aa) |
| | AGQ13153.1 | Hypothetical protein; Similar to gene ACICU_00734 in CP000863. (189 aa) |
| | AGQ13175.1 | Chromosome segregation ATPase; COG:COG1196. (1149 aa) |
| | rpmF | Ribosomal protein L32; COG:COG0333; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | rplY | Ribosomal protein L25 (general stress protein Ctc); This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. (98 aa) |
| | ispE | 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (277 aa) |
| | AGQ13210.1 | Glutamyl-tRNA reductase; COG:COG0373. (427 aa) |
| | dnaG | DNA primase (bacterial type); RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (621 aa) |
| | rpsL | Ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (124 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | AGQ13282.1 | Hypothetical protein. (294 aa) |
| | AGQ13309.1 | Site-specific DNA methylase; COG:COG0270. (492 aa) |
| | AGQ13311.1 | DNA replication protein; COG:COG1484. (254 aa) |
| | betI | Transcriptional regulator; Repressor involved in choline regulation of the bet genes. (207 aa) |
| | AGQ13526.1 | Hypothetical protein; Similar to gene ACICU_01017 in CP000863. (293 aa) |
| | AGQ13581.1 | Hypothetical protein. (116 aa) |
| | AGQ13590.1 | Replicative DNA helicase; COG:COG0305. (470 aa) |
| | AGQ13667.1 | Hypothetical protein; Similar to gene ACICU_01115 in CP000863. (190 aa) |
| | bm3R1_2 | Hypothetical protein; Similar to gene ACICU_01141 in CP000863. (207 aa) |
| | AGQ13716.1 | Hypothetical protein; Similar to gene ACICU_01178 in CP000863. (114 aa) |
| | AGQ13722.1 | HrpA-like helicase; COG:COG1643. (1294 aa) |
| | AGQ13735.1 | Hypothetical protein; COG:COG3791. (135 aa) |
| | AGQ13785.1 | Hypothetical protein; Similar to gene ACICU_01251 in CP000863. (213 aa) |
| | AGQ13810.1 | Hypothetical protein; Similar to gene ACICU_02280 in CP000863. (186 aa) |
| | AGQ13875.1 | 3-hydroxyacyl-CoA dehydrogenase; COG:COG1250. (512 aa) |
| | AGQ14038.1 | Hypothetical protein; Similar to gene ACICU_02071 in CP000863; Belongs to the SOS response-associated peptidase family. (212 aa) |
| | AGQ14076.1 | Putative Zn-dependent peptidase, insulinase-like protein; COG:COG1026. (979 aa) |
| | clpS | Hypothetical protein; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family. (137 aa) |
| | AGQ14186.1 | Transcriptional regulator; COG:COG1309. (189 aa) |
| | AGQ14195.1 | Hypothetical protein; Similar to gene ACICU_01913 in CP000863. (182 aa) |
| | AGQ14384.1 | ABC transporter substrate-binding protein; COG:COG1071. (320 aa) |
| | recR | Recombinational DNA repair protein (RecF pathway); May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | ybaB | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | AGQ14410.1 | Hypothetical protein; COG:COG3791. (141 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa) |
| | AGQ14480.1 | Hypothetical protein; Similar to gene ACICU_01640 in CP000863; Belongs to the SOS response-associated peptidase family. (244 aa) |
| | ihfB | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (100 aa) |
| | rpsA | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (557 aa) |
| | AGQ14507.1 | 6-pyruvoyl-tetrahydropterin synthase; COG:COG0720. (198 aa) |
| | AGQ14513.1 | Hypothetical protein; Similar to gene ACICU_01608 in CP000863. (202 aa) |
| | AGQ14522.1 | Putative transcriptional regulators; COG:COG1475; Belongs to the ParB family. (295 aa) |
| | AGQ14534.1 | Hypothetical protein; COG:COG2850. (387 aa) |
| | yxaF_3 | Transcriptional regulator; COG:COG1309. (188 aa) |
| | AGQ14587.1 | Hypothetical protein; Similar to gene ACICU_01538 in CP000863. (186 aa) |
| | AGQ14671.1 | Transcriptional regulator; COG:COG2808. (211 aa) |
| | fadR | Hypothetical protein; Similar to gene ACICU_01412 in CP000863. (193 aa) |
| | AGQ14736.1 | 3-hydroxyacyl-CoA dehydrogenase; COG:COG1250. (507 aa) |
| | AGQ14747.1 | Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase; Involved in phosphonate degradation. (395 aa) |
| | AGQ14762.1 | Transcriptional regulator; COG:COG1309. (190 aa) |
| | AGQ14774.1 | DNA polymerase III, gamma/tau subunits; COG:COG2812. (688 aa) |
| | AGQ14788.1 | Cation transport ATPase; COG:COG0474. (918 aa) |
| | AGQ14809.1 | Hypothetical protein; Similar to gene ACICU_02280 in CP000863. (184 aa) |
| | eutC | Ethanolamine ammonia-lyase, small subunit; COG:COG4302; Belongs to the EutC family. (271 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (314 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (127 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (75 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (148 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (481 aa) |
| | fis | Factor for inversion stimulation Fis, transcriptional activator; COG:COG2901; Belongs to the transcriptional regulatory Fis family. (89 aa) |
| | AGQ14923.1 | Hypothetical protein; Similar to gene ACICU_02397 in CP000863. (188 aa) |
| | AGQ14937.1 | Hypothetical protein; Similar to gene ACICU_02409 in CP000863. (184 aa) |
| | AGQ14946.1 | Hypothetical protein; Similar to gene ACICU_02421 in CP000863. (212 aa) |
| | rpsU | Ribosomal protein S21; COG:COG0828; Belongs to the bacterial ribosomal protein bS21 family. (71 aa) |
| | rpsB | Ribosomal protein S2; COG:COG0052; Belongs to the universal ribosomal protein uS2 family. (250 aa) |
| | AGQ15122.1 | Hypothetical protein; Similar to gene ACICU_02596 in CP000863. (185 aa) |
| | AGQ15123.1 | Transcriptional regulator; COG:COG1309. (188 aa) |
| | eutQ | Hypothetical protein; Similar to gene ACICU_02606 in CP000863. (117 aa) |
| | AGQ15142.1 | Putative enzyme of the cupin superfamily; COG:COG3450. (116 aa) |
| | AGQ15145.1 | Hypothetical protein; Similar to gene ACICU_02619 in CP000863. (184 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (74 aa) |
| | AGQ15188.1 | Hypothetical protein; Similar to gene ACICU_02662 in CP000863. (210 aa) |
| | AGQ15219.1 | Deoxyribodipyrimidine photolyase; COG:COG0415. (480 aa) |
| | AGQ15244.1 | Hypothetical protein; COG:COG3791. (136 aa) |
| | recO | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. (237 aa) |
| | AGQ15276.1 | Putative ATPases of PP-loop superfamily; COG:COG2102. (228 aa) |
| | hda | ATPase involved in DNA replication initiation; COG:COG0593; Belongs to the DnaA family. HdA subfamily. (232 aa) |
| | AGQ15328.1 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; COG:COG0188. (904 aa) |
| | AGQ15350.1 | Hypothetical protein; Similar to gene ACICU_02890 in CP000863. (205 aa) |
| | rpmA | Ribosomal protein L27; COG:COG0211; Belongs to the bacterial ribosomal protein bL27 family. (85 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | AGQ15441.1 | Hypothetical protein; COG:COG0393; Belongs to the UPF0145 family. (115 aa) |
| | AGQ15442.1 | Hypothetical protein; Similar to gene ACICU_02991 in CP000863; Belongs to the UPF0145 family. (144 aa) |
| | AGQ15533.1 | 3-methyladenine DNA glycosylase; COG:COG2094; Belongs to the DNA glycosylase MPG family. (188 aa) |
| | yvqK | Hypothetical protein; COG:COG2096; Belongs to the Cob(I)alamin adenosyltransferase family. (192 aa) |
| | AGQ15586.1 | Hypothetical protein; COG:COG0397. (480 aa) |
| | AGQ15611.1 | Hypothetical protein; Similar to gene ACICU_03154 in CP000863. (296 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | rpsI | Ribosomal protein S9; COG:COG0103; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | sspB | Stringent starvation protein B; COG:COG2969. (142 aa) |
| | AGQ15665.1 | Hypothetical protein; Similar to gene ACICU_03211 in CP000863. (601 aa) |
| | kstR2_3 | Hypothetical protein; Similar to gene ACICU_03212 in CP000863. (199 aa) |
| | AGQ15673.1 | Putative proline hydroxylase; COG:COG3751. (201 aa) |
| | rplQ | Ribosomal protein L17; COG:COG0203. (125 aa) |
| | rpsD | Ribosomal protein S4-related protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa) |
| | rpsK | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa) |
| | rpsM | Ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (118 aa) |
| | rpmJ | Ribosomal protein L36; COG:COG0257; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | Ribosomal protein L30/L7E; COG:COG1841. (58 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (165 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa) |
| | rplF | Ribosomal protein L6P/L9E; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa) |
| | rpsN | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (178 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (105 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rpmC | Hypothetical protein; Similar to gene ACICU_03271 in CP000863; Belongs to the universal ribosomal protein uL29 family. (65 aa) |
| | rplP | Ribosomal protein L16/L10E; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa) |
| | AGQ16120.1 | Hypothetical protein; Similar to gene ACICU_03653 in CP000863. (429 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (250 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (109 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (91 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (106 aa) |
| | rplD | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. (200 aa) |
| | rplC | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (212 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | rplS | Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (122 aa) |
| | rimM | RimM protein, required for 16S rRNA processing; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family. (182 aa) |
| | rpsP | Ribosomal protein S16; COG:COG0228; Belongs to the bacterial ribosomal protein bS16 family. (83 aa) |
| | AGQ15919.1 | Hypothetical protein; Similar to gene ACICU_03460 in CP000863. (183 aa) |
| | AGQ15927.1 | Hypothetical protein; COG:COG3791. (140 aa) |
| | AGQ16009.1 | Hypothetical protein; Similar to gene ACICU_03547 in CP000863. (116 aa) |
| | uraD | Hypothetical protein; Similar to gene ACICU_03549 in CP000863. (167 aa) |
| | alc | Allantoicase; COG:COG4266; Belongs to the allantoicase family. (336 aa) |
| | parE | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (627 aa) |
| | AGQ16031.1 | Hypothetical protein; COG:COG3803. (179 aa) |
| | AGQ16037.1 | Hypothetical protein; Similar to gene ACICU_03572 in CP000863. (223 aa) |
| | AGQ16091.1 | ATPase; COG:COG2256; related to the helicase subunit of the Holliday junction resolvase. (421 aa) |
