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| | mutY | A/G-specific DNA glycosylase; Adenine glycosylase active on G-A mispairs. (344 aa) |
| | gyrB | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA stran [...] (822 aa) |
| | dnaN | DNA polymerase sliding clamp subunit (PCNA-like protein); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is re [...] (382 aa) |
| | AGQ12552.1 | Hypothetical protein. (189 aa) |
| | dinB | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (351 aa) |
| | parC | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (739 aa) |
| | AGQ12615.1 | Hypothetical protein. (189 aa) |
| | AGQ12624.1 | Hypothetical protein. (189 aa) |
| | fokIM | Adenine-specific DNA methylase; COG:COG3392. (392 aa) |
| | AGQ12664.1 | DNA polymerase III, chi subunit; COG:COG2927. (135 aa) |
| | AGQ12677.1 | Site-specific recombinase XerD; COG:COG4974. (306 aa) |
| | UvrC | Nuclease subunit of the excinuclease complex; COG:COG0322. (575 aa) |
| | AGQ12773.1 | Superfamily I DNA and RNA helicase; COG:COG0210. (500 aa) |
| | AGQ12782.1 | Exonuclease V gamma subunit; COG:COG1330. (1211 aa) |
| | AGQ12783.1 | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); COG:COG1074. (1232 aa) |
| | AGQ12784.1 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; COG:COG0507. (583 aa) |
| | AGQ12794.1 | Primosomal protein N' (replication factor Y) - superfamily II helicase; COG:COG1198. (742 aa) |
| | AGQ12864.1 | Topoisomerase IA; COG:COG0550. (878 aa) |
| | AGQ12867.1 | Superfamily I DNA and RNA helicase; COG:COG0210. (659 aa) |
| | holA | DNA polymerase III, delta subunit; COG:COG1466. (329 aa) |
| | AGQ13033.1 | DNA polymerase I - 3'-5' exonuclease and polymerase domains; COG:COG0749. (923 aa) |
| | ligA | NAD-dependent DNA ligase (contains BRCT domain type II); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (678 aa) |
| | AGQ13255.1 | Superfamily I DNA and RNA helicase; COG:COG0210. (679 aa) |
| | AGQ13282.1 | Hypothetical protein. (294 aa) |
| | AGQ13309.1 | Site-specific DNA methylase; COG:COG0270. (492 aa) |
| | AGQ13359.1 | Hypothetical protein; Similar to gene ACICU_02157 in CP000863. (503 aa) |
| | AGQ13371.1 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; COG:COG0389. (155 aa) |
| | AGQ13374.1 | Site-specific DNA methylase; COG:COG0338. (287 aa) |
| | AGQ13494.1 | Putative EndoIII-related endonuclease; COG:COG0177. (230 aa) |
| | AGQ13505.1 | Hypothetical protein. (189 aa) |
| | AGQ13540.1 | Hypothetical protein; COG:COG5556. (171 aa) |
| | AGQ13590.1 | Replicative DNA helicase; COG:COG0305. (470 aa) |
| | AGQ13604.1 | Hypothetical protein. (160 aa) |
| | dnaQ | DNA polymerase III, epsilon subunit-related 3'-5' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (459 aa) |
| | AGQ13714.1 | Putative extracellular nuclease; COG:COG2374. (812 aa) |
| | AGQ13740.1 | Hypothetical protein; Similar to gene ACICU_01202 in CP000863. (64 aa) |
| | AGQ13741.1 | Exonuclease VII, large subunit; COG:COG1570. (420 aa) |
| | AGQ13777.1 | Mismatch repair ATPase (MutS family); COG:COG0249. (881 aa) |
| | AGQ13848.1 | Hypothetical protein; COG:COG3214. (385 aa) |
| | AGQ13852.1 | Hypothetical protein. (189 aa) |
| | AGQ13883.1 | Retron-type reverse transcriptase; COG:COG3344. (398 aa) |
| | AGQ13914.1 | DNA modification methylase; COG:COG0863. (348 aa) |
| | AGQ13975.1 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; COG:COG0389. (442 aa) |
| | recA | RecA/RadA recombinase; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (349 aa) |
| | AGQ14294.1 | Hypothetical protein. (189 aa) |
| | AGQ14300.1 | Hypothetical protein. (304 aa) |
| | AGQ14301.1 | Hypothetical protein. (95 aa) |
| | AGQ14304.1 | Hypothetical protein. (189 aa) |
| | AGQ14315.1 | G:T/U mismatch-specific DNA glycosylase; COG:COG3663. (195 aa) |
| | AGQ14343.1 | Hypothetical protein. (189 aa) |
| | prmB | Methylase of polypeptide chain release factor; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. (334 aa) |
| | ung | Uracil DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (237 aa) |
| | ycfH | Mg-dependent DNase; COG:COG0084. (257 aa) |
| | AGQ14516.1 | ATPase involved in DNA replication; COG:COG0470. (311 aa) |
| | ruvC | Holliday junction resolvasome, endonuclease subunit; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (181 aa) |
| | AGQ14584.1 | Hypothetical protein. (189 aa) |
| | AGQ14623.1 | DNA polymerase III, alpha subunit; COG:COG0587. (1187 aa) |
| | AGQ14774.1 | DNA polymerase III, gamma/tau subunits; COG:COG2812. (688 aa) |
| | AGQ14800.1 | Hypothetical protein. (189 aa) |
| | AGQ14822.1 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; COG:COG0507. (570 aa) |
| | AGQ14839.1 | DNA mismatch repair enzyme (predicted ATPase); COG:COG0323. (650 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (481 aa) |
| | smrA | Hypothetical protein; COG:COG2840. (231 aa) |
| | AGQ15089.1 | Hypothetical protein. (189 aa) |
| | AGQ15190.1 | Hypothetical protein. (189 aa) |
| | AGQ15196.1 | Superfamily II DNA/RNA helicase, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. (942 aa) |
| | AGQ15219.1 | Deoxyribodipyrimidine photolyase; COG:COG0415. (480 aa) |
| | AGQ15239.1 | Helicase subunit of the DNA excision repair complex; COG:COG0556. (673 aa) |
| | AGQ15240.1 | Hypothetical protein; Similar to gene ACICU_02783 in CP000863. (263 aa) |
| | ruvA | Holliday junction resolvasome, DNA-binding subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa) |
| | ruvB | Holliday junction resolvasome, helicase subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa) |
| | AGQ15328.1 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; COG:COG0188. (904 aa) |
| | AGQ15338.1 | Putative ATP-dependent serine protease; COG:COG1066. (462 aa) |
| | AGQ15531.1 | Hypothetical protein. (189 aa) |
| | AGQ15533.1 | 3-methyladenine DNA glycosylase; COG:COG2094; Belongs to the DNA glycosylase MPG family. (188 aa) |
| | AGQ15534.1 | Formamidopyrimidine-DNA glycosylase; COG:COG0266. (274 aa) |
| | AGQ16100.1 | 3-methyladenine DNA glycosylase; COG:COG2818. (186 aa) |
| | AGQ15545.1 | Hypothetical protein; Similar to gene ACICU_03090 in CP000863. (138 aa) |
| | recG | RecG-like helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (681 aa) |
| | AGQ15769.1 | Hypothetical protein; Similar to gene ACICU_03316 in CP000863. (265 aa) |
| | AGQ15825.1 | Hypothetical protein; Similar to gene ACICU_03370 in CP000863. (157 aa) |
| | AGQ15835.1 | Hypothetical protein. (189 aa) |
| | uvrA | Excinuclease ATPase subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (943 aa) |
| | tnpAba26 | Transposase-like protein; Required for the transposition of the insertion element. (402 aa) |
| | exoA | Exonuclease III; COG:COG0708. (274 aa) |
| | parE | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (627 aa) |
| | AGQ16028.1 | Hypothetical protein. (189 aa) |
| | AGQ16062.1 | Hypothetical protein. (189 aa) |
