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| | AGQ14623.1 | DNA polymerase III, alpha subunit; COG:COG0587. (1187 aa) |
| | fmt | Methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. (320 aa) |
| | AGQ16100.1 | 3-methyladenine DNA glycosylase; COG:COG2818. (186 aa) |
| | mutY | A/G-specific DNA glycosylase; Adenine glycosylase active on G-A mispairs. (344 aa) |
| | AGQ16062.1 | Hypothetical protein. (189 aa) |
| | dtd | D-Tyr-tRNAtyr deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (147 aa) |
| | AGQ16028.1 | Hypothetical protein. (189 aa) |
| | parE | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. (627 aa) |
| | exoA | Exonuclease III; COG:COG0708. (274 aa) |
| | tnpAba26 | Transposase-like protein; Required for the transposition of the insertion element. (402 aa) |
| | uvrA | Excinuclease ATPase subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. (943 aa) |
| | gltX | Glutamyl- and glutaminyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily. (502 aa) |
| | rsmH | Putative S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA. (307 aa) |
| | AGQ15835.1 | Hypothetical protein. (189 aa) |
| | AGQ15828.1 | DNA-directed RNA polymerase, subunit K/omega; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. (92 aa) |
| | AGQ15825.1 | Hypothetical protein; Similar to gene ACICU_03370 in CP000863. (157 aa) |
| | trmD | tRNA-(guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family. (246 aa) |
| | truB | Pseudouridine synthase; Responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 1 subfamily. (301 aa) |
| | AGQ15774.1 | Glycyl-tRNA synthetase, beta subunit; COG:COG0751. (689 aa) |
| | AGQ15773.1 | Glycyl-tRNA synthetase, alpha subunit; COG:COG0752. (325 aa) |
| | AGQ15769.1 | Hypothetical protein; Similar to gene ACICU_03316 in CP000863. (265 aa) |
| | AGQ15758.1 | Superfamily II DNA and RNA helicase; COG:COG0513; Belongs to the DEAD box helicase family. (606 aa) |
| | recG | RecG-like helicase; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. (681 aa) |
| | rpoA | DNA-directed RNA polymerase, alpha subunit/40 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (335 aa) |
| | rnr | Exoribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. (805 aa) |
| | ybeY | Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (158 aa) |
| | AGQ15677.1 | Hypothetical protein; Similar to gene ACICU_03223 in CP000863. (179 aa) |
| | rlmJ | Protein involved in catabolism of external DNA; Specifically methylates the adenine in position 2030 of 23S rRNA. (285 aa) |
| | rsmA | Dimethyladenosine transferase (rRNA methylation); Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (270 aa) |
| | mnmC | Hypothetical protein; Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34; In the C-terminal section; belongs to the DAO family. (623 aa) |
| | tgt | Queuine/archaeosine tRNA-ribosyltransferase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribo [...] (377 aa) |
| | AGQ15618.1 | S-adenosylmethionine:tRNA-ribosyltransferase- isomerase (queuine synthetase); Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA). (345 aa) |
| | ghy | Hypothetical protein; Similar to gene ACICU_03149 in CP000863. (296 aa) |
| | aspS | Aspartyl-tRNA synthetase; Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps: L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp/Asn); Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily. (592 aa) |
| | AGQ15545.1 | Hypothetical protein; Similar to gene ACICU_03090 in CP000863. (138 aa) |
| | AGQ15542.1 | Hypothetical protein; COG:COG1690. (401 aa) |
| | AGQ15540.1 | 16S RNA G1207 methylase RsmC; COG:COG2813. (337 aa) |
| | AGQ15534.1 | Formamidopyrimidine-DNA glycosylase; COG:COG0266. (274 aa) |
| | AGQ15533.1 | 3-methyladenine DNA glycosylase; COG:COG2094; Belongs to the DNA glycosylase MPG family. (188 aa) |
| | AGQ15531.1 | Hypothetical protein. (189 aa) |
| | AGQ15520.1 | Hypothetical protein; COG:COG3422. (113 aa) |
| | AGQ15519.1 | Prolyl-tRNA synthetase; Catalyzes the attachment of proline to tRNA(Pro) in a two- step reaction: proline is first activated by ATP to form Pro-AMP and then transferred to the acceptor end of tRNA(Pro). As ProRS can inadvertently accommodate and process non-cognate amino acids such as alanine and cysteine, to avoid such errors it has two additional distinct editing activities against alanine. One activity is designated as 'pretransfer' editing and involves the tRNA(Pro)-independent hydrolysis of activated Ala-AMP. The other activity is designated 'posttransfer' editing and involves dea [...] (571 aa) |
| | GatB | Asp-tRNAAsn/Glu-tRNAGln amidotransferase B subunit (PET112-like protein); COG:COG0064. (489 aa) |
| | AGQ15486.1 | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit-related amidase; COG:COG0154. (492 aa) |
| | gatC | Asp-tRNAAsn/Glu-tRNAGln amidotransferase C subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatC family. (104 aa) |
| | AGQ15480.1 | Ribonucleases G and E; COG:COG1530. (469 aa) |
| | AGQ15446.1 | Valyl-tRNA synthetase; COG:COG0525. (959 aa) |
| | serS | Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec). (423 aa) |
| | trmL | Putative rRNA methylase (SpoU class); Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S-adenosyl-L-methionine to the 2'-OH of the wobble nucleotide. (157 aa) |
| | trpS | Tryptophanyl-tRNA synthetase; COG:COG0180; Belongs to the class-I aminoacyl-tRNA synthetase family. (337 aa) |
| | rlmE | 23S rRNA methylase; Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit. (216 aa) |
| | AGQ15340.1 | Truncated, possibly inactive, lysyl-tRNA synthetase (class II); COG:COG2269. (324 aa) |
| | AGQ15338.1 | Putative ATP-dependent serine protease; COG:COG1066. (462 aa) |
| | AGQ15328.1 | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; COG:COG0188. (904 aa) |
| | rlmB_2 | rRNA methylase; COG:COG0566. (258 aa) |
| | ruvB | Holliday junction resolvasome, helicase subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. (334 aa) |
| | ruvA | Holliday junction resolvasome, DNA-binding subunit; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. (199 aa) |
| | rnc | dsRNA-specific ribonuclease; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism. (155 aa) |
| | AGQ15248.1 | Hydroxylase for synthesis of 2-methylthio-cis-ribozeatin in tRNA; COG:COG4445. (214 aa) |
| | AGQ15240.1 | Hypothetical protein; Similar to gene ACICU_02783 in CP000863. (263 aa) |
| | AGQ15239.1 | Helicase subunit of the DNA excision repair complex; COG:COG0556. (673 aa) |
| | dusB | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. (341 aa) |
| | AGQ15219.1 | Deoxyribodipyrimidine photolyase; COG:COG0415. (480 aa) |
| | rluE | 16S rRNA uridine-516 pseudouridylate synthase-related pseudouridylate synthase; COG:COG1187; Belongs to the pseudouridine synthase RsuA family. (240 aa) |
| | rluA_2-2 | Pseudouridylate synthase, 23S RNA-specific; COG:COG0564. (212 aa) |
| | AGQ15196.1 | Superfamily II DNA/RNA helicase, SNF2 family; Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair. Belongs to the SNF2/RAD54 helicase family. RapA subfamily. (942 aa) |
| | AGQ15190.1 | Hypothetical protein. (189 aa) |
| | AGQ15089.1 | Hypothetical protein. (189 aa) |
| | smrA | Hypothetical protein; COG:COG2840. (231 aa) |
| | cca | tRNA nucleotidyltransferase/poly(A) polymerase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate. Also shows phosphatase, 2'-nucleotidase and 2',3'-cyclic phosphodiesterase activities. These phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases. (412 aa) |
| | exoX | DNA polymerase III, epsilon subunit-related 3'-5' exonuclease; COG:COG0847. (234 aa) |
| | tsaA | Hypothetical protein; COG:COG1720. (231 aa) |
| | AGQ14996.1 | Metal-dependent hydrolases of the beta-lactamase superfamily III; COG:COG1234. (318 aa) |
| | rhlB | Superfamily II DNA and RNA helicase; DEAD-box RNA helicase involved in RNA degradation. Has RNA- dependent ATPase activity and unwinds double-stranded RNA. Belongs to the DEAD box helicase family. RhlB subfamily. (383 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (481 aa) |
| | AGQ14844.1 | 16S rRNA uridine-516 pseudouridylate synthase-related pseudouridylate synthase; COG:COG1187; Belongs to the pseudouridine synthase RsuA family. (234 aa) |
| | AGQ14841.1 | Pseudouridylate synthase, 23S RNA-specific; COG:COG0564. (302 aa) |
| | AGQ14839.1 | DNA mismatch repair enzyme (predicted ATPase); COG:COG0323. (650 aa) |
| | miaA | tRNA delta(2)-isopentenylpyrophosphate transferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. (314 aa) |
| | glnS | Glutamyl- and glutaminyl-tRNA synthetase; COG:COG0008. (575 aa) |
| | AGQ14822.1 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; COG:COG0507. (570 aa) |
| | AGQ14800.1 | Hypothetical protein. (189 aa) |
| | AGQ14774.1 | DNA polymerase III, gamma/tau subunits; COG:COG2812. (688 aa) |
| | AGQ14624.1 | rRNA methylase; COG:COG0565. (279 aa) |
| | AGQ14584.1 | Hypothetical protein. (189 aa) |
| | ruvC | Holliday junction resolvasome, endonuclease subunit; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. (181 aa) |
| | AGQ14549.1 | SAM-dependent methyltransferase; Dual-specificity methyltransferase that catalyzes the formation of 5-methyluridine at position 54 (m5U54) in all tRNAs, and that of position 341 (m5U341) in tmRNA (transfer-mRNA). (361 aa) |
| | rsmG | Putative S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA. (210 aa) |
| | AGQ14516.1 | ATPase involved in DNA replication; COG:COG0470. (311 aa) |
| | ycfH | Mg-dependent DNase; COG:COG0084. (257 aa) |
| | ung | Uracil DNA glycosylase; Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine. (237 aa) |
| | mfd | Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily. (1153 aa) |
| | AGQ14449.1 | Hypothetical protein; COG:COG2606. (154 aa) |
| | AGQ14399.1 | Ribonuclease D; COG:COG0349. (374 aa) |
| | prmB | Methylase of polypeptide chain release factor; Specifically methylates the 50S ribosomal protein L3 on a specific glutamine residue; Belongs to the protein N5-glutamine methyltransferase family. PrmB subfamily. (334 aa) |
| | AGQ14343.1 | Hypothetical protein. (189 aa) |
| | AGQ14315.1 | G:T/U mismatch-specific DNA glycosylase; COG:COG3663. (195 aa) |
| | AGQ14304.1 | Hypothetical protein. (189 aa) |
| | AGQ14301.1 | Hypothetical protein. (95 aa) |
| | AGQ14300.1 | Hypothetical protein. (304 aa) |
| | AGQ14294.1 | Hypothetical protein. (189 aa) |
| | iaaH | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit-related amidase; COG:COG0154; Belongs to the amidase family. (486 aa) |
| | recA | RecA/RadA recombinase; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. (349 aa) |
| | AGQ13975.1 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; COG:COG0389. (442 aa) |
| | AGQ13914.1 | DNA modification methylase; COG:COG0863. (348 aa) |
| | AGQ13883.1 | Retron-type reverse transcriptase; COG:COG3344. (398 aa) |
| | AGQ13852.1 | Hypothetical protein. (189 aa) |
| | AGQ13848.1 | Hypothetical protein; COG:COG3214. (385 aa) |
| | atzF | Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit-related amidase; COG:COG0154. (603 aa) |
| | AGQ13777.1 | Mismatch repair ATPase (MutS family); COG:COG0249. (881 aa) |
| | cysS | Cysteinyl-tRNA synthetase; COG:COG0215; Belongs to the class-I aminoacyl-tRNA synthetase family. (473 aa) |
| | AGQ13741.1 | Exonuclease VII, large subunit; COG:COG1570. (420 aa) |
| | AGQ13740.1 | Hypothetical protein; Similar to gene ACICU_01202 in CP000863. (64 aa) |
| | AGQ13722.1 | HrpA-like helicase; COG:COG1643. (1294 aa) |
| | AGQ13714.1 | Putative extracellular nuclease; COG:COG2374. (812 aa) |
| | AGQ13713.1 | Putative S-adenosylmethionine-dependent methyltransferase; COG:COG0220. (246 aa) |
| | AGQ13706.1 | Putative SAM-dependent methyltransferase; Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA. Belongs to the methyltransferase superfamily. RlmKL family. (741 aa) |
| | alaS | Alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. (885 aa) |
| | rnhB | Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (188 aa) |
| | rnt | DNA polymerase III, epsilon subunit-related 3'-5' exonuclease; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. (220 aa) |
| | dnaQ | DNA polymerase III, epsilon subunit-related 3'-5' exonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (459 aa) |
| | AGQ13642.1 | Putative methyltransferase; COG:COG0313. (278 aa) |
| | AGQ13604.1 | Hypothetical protein. (160 aa) |
| | AGQ13590.1 | Replicative DNA helicase; COG:COG0305. (470 aa) |
| | AGQ13540.1 | Hypothetical protein; COG:COG5556. (171 aa) |
| | AGQ13505.1 | Hypothetical protein. (189 aa) |
| | rlmH | Hypothetical protein; Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA; Belongs to the RNA methyltransferase RlmH family. (159 aa) |
| | AGQ13494.1 | Putative EndoIII-related endonuclease; COG:COG0177. (230 aa) |
| | rsmD | N6-adenine-specific methylase; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle; Belongs to the methyltransferase superfamily. RsmD family. (183 aa) |
| | AGQ13464.1 | Lysyl-tRNA synthetase (class II); COG:COG1190. (520 aa) |
| | AGQ13374.1 | Site-specific DNA methylase; COG:COG0338. (287 aa) |
| | AGQ13371.1 | Nucleotidyltransferase/DNA polymerase involved in DNA repair; COG:COG0389. (155 aa) |
| | AGQ13360.1 | Hypothetical protein; Similar to gene ACICU_02156 in CP000863. (1230 aa) |
| | AGQ13359.1 | Hypothetical protein; Similar to gene ACICU_02157 in CP000863. (503 aa) |
| | AGQ13309.1 | Site-specific DNA methylase; COG:COG0270. (492 aa) |
| | AGQ13293.1 | DNA polymerase III, epsilon subunit-related 3'-5' exonuclease; COG:COG0847. (226 aa) |
| | AGQ13282.1 | Hypothetical protein. (294 aa) |
| | AGQ13255.1 | Superfamily I DNA and RNA helicase; COG:COG0210. (679 aa) |
| | rluD | Pseudouridylate synthase, 23S RNA-specific; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (350 aa) |
| | dnaG | DNA primase (bacterial type); RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (621 aa) |
| | AGQ13210.1 | Glutamyl-tRNA reductase; COG:COG0373. (427 aa) |
| | pth | Peptidyl-tRNA hydrolase; The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. Belongs to the PTH family. (193 aa) |
| | AGQ13187.1 | 16S rRNA uridine-516 pseudouridylate synthase-related pseudouridylate synthase; COG:COG1187; Belongs to the pseudouridine synthase RsuA family. (307 aa) |
| | ligA | NAD-dependent DNA ligase (contains BRCT domain type II); DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily. (678 aa) |
| | dusC | tRNA-dihydrouridine synthase; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines. Specifically modifies U16 in tRNAs. Belongs to the Dus family. DusC subfamily. (314 aa) |
| | MetG | Methionyl-tRNA synthetase; COG:COG0143; Belongs to the class-I aminoacyl-tRNA synthetase family. (687 aa) |
| | rsmJ | SAM-dependent methyltransferase; Specifically methylates the guanosine in position 1516 of 16S rRNA. (263 aa) |
| | AGQ13033.1 | DNA polymerase I - 3'-5' exonuclease and polymerase domains; COG:COG0749. (923 aa) |
| | rho | Transcription termination factor; Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA- dependent ATPase activity, and release of the mRNA from the DNA template. (422 aa) |
| | PheT | Phenylalanyl-tRNA synthetase beta subunit; COG:COG0072; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. (793 aa) |
| | pheS | Phenylalanyl-tRNA synthetase alpha subunit; COG:COG0016; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily. (326 aa) |
| | thrS_2 | Threonyl-tRNA synthetase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr). (640 aa) |
| | AGQ13003.1 | tRNA nucleotidyltransferase/poly(A) polymerase; COG:COG0617. (487 aa) |
| | rlmD | SAM-dependent methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 1939 (m5U1939) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmD subfamily. (463 aa) |
| | AGQ12983.1 | tRNA-dihydrouridine synthase; COG:COG0042. (334 aa) |
| | AGQ12964.1 | Leucyl-tRNA synthetase; COG:COG0495; Belongs to the class-I aminoacyl-tRNA synthetase family. (874 aa) |
| | holA | DNA polymerase III, delta subunit; COG:COG1466. (329 aa) |
| | orn | Oligoribonuclease (3'->5' exoribonuclease); 3'-to-5' exoribonuclease specific for small oligoribonucleotides; Belongs to the oligoribonuclease family. (173 aa) |
| | AGQ12928.1 | Histidyl-tRNA synthetase; COG:COG0124. (430 aa) |
| | AGQ12924.1 | Putative Fe-S-cluster redox enzyme; COG:COG0820. (410 aa) |
| | AGQ12867.1 | Superfamily I DNA and RNA helicase; COG:COG0210. (659 aa) |
| | AGQ12864.1 | Topoisomerase IA; COG:COG0550. (878 aa) |
| | truA | Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (265 aa) |
| | AGQ12826.1 | Pseudouridylate synthase, 23S RNA-specific; COG:COG0564. (310 aa) |
| | AGQ12824.1 | Ribonucleases G and E; COG:COG1530. (1110 aa) |
| | AGQ12809.1 | Hypothetical protein; Similar to gene ACICU_00395 in CP000863. (210 aa) |
| | AGQ12794.1 | Primosomal protein N' (replication factor Y) - superfamily II helicase; COG:COG1198. (742 aa) |
| | AGQ12784.1 | ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; COG:COG0507. (583 aa) |
| | AGQ12783.1 | ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); COG:COG1074. (1232 aa) |
| | AGQ12782.1 | Exonuclease V gamma subunit; COG:COG1330. (1211 aa) |
| | AGQ12773.1 | Superfamily I DNA and RNA helicase; COG:COG0210. (500 aa) |
| | AGQ12753.1 | rRNA methylase; COG:COG0566. (249 aa) |
| | UvrC | Nuclease subunit of the excinuclease complex; COG:COG0322. (575 aa) |
| | rpoC | DNA-directed RNA polymerase, beta' subunit/160 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1397 aa) |
| | rpoB | DNA-directed RNA polymerase, beta subunit/140 kD subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1362 aa) |
| | AGQ12683.1 | Glutamyl- and glutaminyl-tRNA synthetase; COG:COG0008; Belongs to the class-I aminoacyl-tRNA synthetase family. (310 aa) |
| | AGQ12677.1 | Site-specific recombinase XerD; COG:COG4974. (306 aa) |
| | AGQ12664.1 | DNA polymerase III, chi subunit; COG:COG2927. (135 aa) |
| | fokIM | Adenine-specific DNA methylase; COG:COG3392. (392 aa) |
| | AGQ12624.1 | Hypothetical protein. (189 aa) |
| | AGQ12615.1 | Hypothetical protein. (189 aa) |
| | parC | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), A subunit; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase GyrA/ParC subunit family. ParC type 1 subfamily. (739 aa) |
| | dinB | Nucleotidyltransferase/DNA polymerase involved in DNA repair; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII. (351 aa) |
| | AGQ12552.1 | Hypothetical protein. (189 aa) |
| | ArgS | Arginyl-tRNA synthetase; COG:COG0018; Belongs to the class-I aminoacyl-tRNA synthetase family. (596 aa) |
| | rluA_2 | Pseudouridylate synthase, 23S RNA-specific; COG:COG0564. (221 aa) |
| | Rph | RNase PH; COG:COG0689. (238 aa) |
| | ileS | Isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile). Belongs to the class-I aminoacyl-tRNA synthetase family. IleS type 1 subfamily. (945 aa) |
| | rnpA | RNase P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme. (130 aa) |
| | dnaN | DNA polymerase sliding clamp subunit (PCNA-like protein); Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is re [...] (382 aa) |
| | gyrB | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA stran [...] (822 aa) |
| | tyrS | Tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two- step reaction: tyrosine is first activated by ATP to form Tyr-AMP and then transferred to the acceptor end of tRNA(Tyr); Belongs to the class-I aminoacyl-tRNA synthetase family. TyrS type 2 subfamily. (410 aa) |
