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| | AGQ12794.1 | Primosomal protein N' (replication factor Y) - superfamily II helicase; COG:COG1198. (742 aa) |
| | AGQ12811.1 | Hypothetical protein; COG:COG3791. (136 aa) |
| | rpmE2 | Ribosomal protein L31; COG:COG0254. (84 aa) |
| | rpmG | Ribosomal protein L33; COG:COG0267; Belongs to the bacterial ribosomal protein bL33 family. (51 aa) |
| | rpmB | Ribosomal protein L28; COG:COG0227; Belongs to the bacterial ribosomal protein bL28 family. (78 aa) |
| | AGQ12906.1 | Hypothetical protein; Similar to gene ACICU_00490 in CP000863. (184 aa) |
| | AGQ12910.1 | Dihydroxyacid dehydratase/phosphogluconate dehydratase; COG:COG0129; Belongs to the IlvD/Edd family. (617 aa) |
| | pilW | Tfp pilus assembly protein PilF; COG:COG3063. (255 aa) |
| | AGQ12965.1 | Hypothetical protein; Similar to gene ACICU_00550 in CP000863. (109 aa) |
| | rpmI | Ribosomal protein L35; COG:COG0291; Belongs to the bacterial ribosomal protein bL35 family. (64 aa) |
| | rplT | Ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (119 aa) |
| | ihfA | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (98 aa) |
| | AGQ13100.1 | Hypothetical protein; Similar to gene ACICU_00681 in CP000863. (895 aa) |
| | AGQ13111.1 | Hypothetical protein; Similar to gene ACICU_00692 in CP000863. (316 aa) |
| | AGQ13112.1 | Transposase-like protein; COG:COG2801. (628 aa) |
| | AGQ13175.1 | Chromosome segregation ATPase; COG:COG1196. (1149 aa) |
| | rpmF | Ribosomal protein L32; COG:COG0333; Belongs to the bacterial ribosomal protein bL32 family. (61 aa) |
| | rplY | Ribosomal protein L25 (general stress protein Ctc); This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. (98 aa) |
| | AGQ13209.1 | TPR repeat protein; COG:COG0457. (545 aa) |
| | dnaG | DNA primase (bacterial type); RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. (621 aa) |
| | AGQ13223.1 | Esterase/lipase; COG:COG0657. (324 aa) |
| | rpsG | Ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | AGQ13310.1 | Hypothetical protein; Similar to gene ACICU_02209 in CP000863. (347 aa) |
| | AGQ13311.1 | DNA replication protein; COG:COG1484. (254 aa) |
| | AGQ13331.1 | Hypothetical protein; Similar to gene ACICU_02187 in CP000863. (66 aa) |
| | AGQ13494.1 | Putative EndoIII-related endonuclease; COG:COG0177. (230 aa) |
| | AGQ13526.1 | Hypothetical protein; Similar to gene ACICU_01017 in CP000863. (293 aa) |
| | AGQ13556.1 | Hypothetical protein; Similar to gene ACICU_01048 in CP000863. (132 aa) |
| | AGQ13589.1 | Hypothetical protein. (356 aa) |
| | AGQ13590.1 | Replicative DNA helicase; COG:COG0305. (470 aa) |
| | AGQ13645.1 | Esterase/lipase; COG:COG0657. (287 aa) |
| | AGQ13735.1 | Hypothetical protein; COG:COG3791. (135 aa) |
| | AGQ13758.1 | Hypothetical protein; Similar to gene ACICU_01221 in CP000863. (197 aa) |
| | prsE | Membrane-fusion protein; COG:COG0845. (396 aa) |
| | AGQ13845.1 | Ankyrin repeat protein; COG:COG0666. (222 aa) |
| | AGQ13914.1 | DNA modification methylase; COG:COG0863. (348 aa) |
| | AGQ13915.1 | Hypothetical protein; COG:COG3756. (316 aa) |
| | AGQ13944.1 | Hypothetical protein; Similar to gene ACICU_01048 in CP000863. (117 aa) |
| | AGQ14033.1 | Kynureninase; COG:COG3844. (416 aa) |
| | AGQ14038.1 | Hypothetical protein; Similar to gene ACICU_02071 in CP000863; Belongs to the SOS response-associated peptidase family. (212 aa) |
| | AGQ14126.1 | Dehydrogenases with different specificities (; COG:COG1028; related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family. (247 aa) |
| | AGQ14176.1 | Esterase/lipase; COG:COG0657. (336 aa) |
| | AGQ14179.1 | Hypothetical protein; COG:COG3268. (355 aa) |
| | recR | Recombinational DNA repair protein (RecF pathway); May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | ybaB | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (109 aa) |
| | AGQ14410.1 | Hypothetical protein; COG:COG3791. (141 aa) |
| | hup | Bacterial nucleoid DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa) |
| | rpsT | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (88 aa) |
| | AGQ14480.1 | Hypothetical protein; Similar to gene ACICU_01640 in CP000863; Belongs to the SOS response-associated peptidase family. (244 aa) |
| | ihfB | Bacterial nucleoid DNA-binding protein; This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control. Belongs to the bacterial histone-like protein family. (100 aa) |
| | rpsA | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. (557 aa) |
| | AGQ14522.1 | Putative transcriptional regulators; COG:COG1475; Belongs to the ParB family. (295 aa) |
| | AGQ14526.1 | Putative phosphotransferase; COG:COG3178; related to Ser/Thr protein kinase. (337 aa) |
| | cobB | NAD-dependent protein deacetylase, SIR2 family; COG:COG0846. (221 aa) |
| | AGQ14766.1 | Lysophospholipase; COG:COG2267. (342 aa) |
| | AGQ14828.1 | Ethanolamine ammonia-lyase, large subunit; COG:COG4303. (461 aa) |
| | eutC | Ethanolamine ammonia-lyase, small subunit; COG:COG4302; Belongs to the EutC family. (271 aa) |
| | rpsF | Ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (127 aa) |
| | rpsR | Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (75 aa) |
| | rplI | Ribosomal protein L9; Binds to the 23S rRNA. (148 aa) |
| | dnaB | Replicative DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins. Belongs to the helicase family. DnaB subfamily. (481 aa) |
| | fis | Factor for inversion stimulation Fis, transcriptional activator; COG:COG2901; Belongs to the transcriptional regulatory Fis family. (89 aa) |
| | rpsU | Ribosomal protein S21; COG:COG0828; Belongs to the bacterial ribosomal protein bS21 family. (71 aa) |
| | AGQ15008.1 | Hypothetical protein; Similar to gene ACICU_02483 in CP000863. (183 aa) |
| | rpsB | Ribosomal protein S2; COG:COG0052; Belongs to the universal ribosomal protein uS2 family. (250 aa) |
| | eutQ | Hypothetical protein; Similar to gene ACICU_02606 in CP000863. (117 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (74 aa) |
| | AGQ15244.1 | Hypothetical protein; COG:COG3791. (136 aa) |
| | recO | Recombinational DNA repair protein (RecF pathway); Involved in DNA repair and RecF pathway recombination. (237 aa) |
| | tolA | Hypothetical protein; Similar to gene ACICU_02835 in CP000863. (448 aa) |
| | hda | ATPase involved in DNA replication initiation; COG:COG0593; Belongs to the DnaA family. HdA subfamily. (232 aa) |
| | rpmA | Ribosomal protein L27; COG:COG0211; Belongs to the bacterial ribosomal protein bL27 family. (85 aa) |
| | rplU | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | AGQ15447.1 | Hypothetical protein; Similar to gene ACICU_02996 in CP000863. (194 aa) |
| | AGQ15480.1 | Ribonucleases G and E; COG:COG1530. (469 aa) |
| | mreB | Actin-like ATPase involved in cell morphogenesis; COG:COG1077. (346 aa) |
| | AGQ15520.1 | Hypothetical protein; COG:COG3422. (113 aa) |
| | yvqK | Hypothetical protein; COG:COG2096; Belongs to the Cob(I)alamin adenosyltransferase family. (192 aa) |
| | AGQ15626.1 | DNA repair protein; COG:COG2003. (235 aa) |
| | AGQ15645.1 | Putative phosphohydrolase; COG:COG1408. (336 aa) |
| | rplM | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (142 aa) |
| | rpsI | Ribosomal protein S9; COG:COG0103; Belongs to the universal ribosomal protein uS9 family. (128 aa) |
| | sspB | Stringent starvation protein B; COG:COG2969. (142 aa) |
| | rplQ | Ribosomal protein L17; COG:COG0203. (125 aa) |
| | rpsD | Ribosomal protein S4-related protein; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (208 aa) |
| | rpsK | Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa) |
| | rpmJ | Ribosomal protein L36; COG:COG0257; Belongs to the bacterial ribosomal protein bL36 family. (38 aa) |
| | rplO | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | Ribosomal protein L30/L7E; COG:COG1841. (58 aa) |
| | rpsE | Ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (165 aa) |
| | rplR | Ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (116 aa) |
| | rplF | Ribosomal protein L6P/L9E; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (177 aa) |
| | rpsH | Ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa) |
| | rpsN | Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (101 aa) |
| | rplE | Ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (178 aa) |
| | rplX | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. (105 aa) |
| | rplN | Ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (122 aa) |
| | rpsQ | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (85 aa) |
| | rpmC | Hypothetical protein; Similar to gene ACICU_03271 in CP000863; Belongs to the universal ribosomal protein uL29 family. (65 aa) |
| | rplP | Ribosomal protein L16/L10E; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (137 aa) |
| | rpsC | Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (250 aa) |
| | rplV | Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (109 aa) |
| | rpsS | Ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (91 aa) |
| | rplB | Ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa) |
| | rplW | Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (106 aa) |
| | rplD | Ribosomal protein L4; Forms part of the polypeptide exit tunnel. (200 aa) |
| | rplC | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. (212 aa) |
| | rpsJ | Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (103 aa) |
| | AGQ15791.1 | Hypothetical protein; Similar to gene ACICU_03337 in CP000863. (425 aa) |
| | rpsP | Ribosomal protein S16; COG:COG0228; Belongs to the bacterial ribosomal protein bS16 family. (83 aa) |
| | AGQ15839.1 | Beta-propeller domains of methanol dehydrogenase type; COG:COG1512. (360 aa) |
| | AGQ15927.1 | Hypothetical protein; COG:COG3791. (140 aa) |
| | AGQ16009.1 | Hypothetical protein; Similar to gene ACICU_03547 in CP000863. (116 aa) |
| | dtd | D-Tyr-tRNAtyr deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (147 aa) |
| | pncA | Amidase; COG:COG1335; related to nicotinamidase. (214 aa) |
| | AGQ16091.1 | ATPase; COG:COG2256; related to the helicase subunit of the Holliday junction resolvase. (421 aa) |
| | rpsO | Ribosomal protein S15P/S13E; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | infB | Translation initiation factor 2 (IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily. (899 aa) |
| | AGQ12751.1 | Hypothetical protein; Similar to gene ACICU_00338 in CP000863. (436 aa) |
| | recN | ATPase involved in DNA repair; May be involved in recombinational repair of damaged DNA. (555 aa) |
| | rplL | Ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (123 aa) |
| | rplJ | Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (168 aa) |
| | rplA | Ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (231 aa) |
| | rplK | Ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (142 aa) |
| | AGQ12640.1 | Transposase-like protein; COG:COG2801. (636 aa) |
| | AGQ12619.1 | Transposase-like protein; COG:COG2801. (636 aa) |
| | AGQ12612.1 | Transposase-like protein; COG:COG2801. (636 aa) |
| | novR | Ribulose-5-phosphate 4-epimerase-related epimerase and aldolase; COG:COG0235. (258 aa) |
| | AGQ12493.1 | Dehydrogenases with different specificities (; COG:COG1028; related to short-chain alcohol dehydrogenases). (233 aa) |
| | AGQ12422.1 | Esterase/lipase; COG:COG0657. (356 aa) |
| | rpmH | Ribosomal protein L34; COG:COG0230; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | dnaA | ATPase involved in DNA replication initiation; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family. (465 aa) |
| | recF | Recombinational DNA repair ATPase (RecF pathway); The RecF protein is involved in DNA metabolism; it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP. (360 aa) |
| | gyrB | Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA stran [...] (822 aa) |
