34 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_00166	Probable karyopherin beta-1 subunit (Importin 95). (852 aa)
	PIIN_00377	Uncharacterized protein. (985 aa)
	PIIN_00393	RanBD1 domain-containing protein. (485 aa)
	PIIN_00744	Probable CRM1-nuclear export factor, exportin. (1070 aa)
	PIIN_00882	Related to mRNA export factor mex67. (609 aa)
	PIIN_01203	Uncharacterized protein. (1561 aa)
	PIIN_01467	Probable ran GTPase activating protein 1. (424 aa)
	PIIN_01452	PARP catalytic domain-containing protein. (407 aa)
	PIIN_01651	TPR_MLP1_2 domain-containing protein. (1824 aa)
	PIIN_02000	Uncharacterized protein. (1641 aa)
	PIIN_03465	Uncharacterized protein. (313 aa)
	PIIN_03524	NTF2 domain-containing protein. (176 aa)
	PIIN_03575	Nup54 domain-containing protein. (583 aa)
	PIIN_04454	Uncharacterized protein. (477 aa)
	PIIN_04914	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family. (216 aa)
	PIIN_05171	Uncharacterized protein. (520 aa)
	PIIN_05209	Related to NUP170-nuclear pore protein. (1356 aa)
	PIIN_05355	Peptidase S59 domain-containing protein. (1868 aa)
	PIIN_05618	Uncharacterized protein. (2315 aa)
	PIIN_05690	Uncharacterized protein. (505 aa)
	PIIN_06011	Uncharacterized protein. (521 aa)
	PIIN_06102	Nuclear pore complex protein; Functions as a component of the nuclear pore complex (NPC). (786 aa)
	PIIN_06131	Uncharacterized protein. (2124 aa)
	PIIN_06351	Nsp1_C domain-containing protein. (895 aa)
	PIIN_06723	Nuclear pore complex protein Nup85; Functions as a component of the nuclear pore complex (NPC). (731 aa)
	PIIN_06788	Uncharacterized protein. (325 aa)
	PIIN_06851	ELYS domain-containing protein. (982 aa)
	PIIN_07098	Related to cellulose binding protein CEL1. (229 aa)
	PIIN_07234	Nuclear pore protein. (852 aa)
	PIIN_07311	Uncharacterized protein. (1714 aa)
	PIIN_09003	Related to proteophosphoglycan 5-Leishmania major strain Friedlin. (1317 aa)
	PIIN_10373	Uncharacterized protein. (1009 aa)
	PIIN_00478	Related to nuclear pore protein; Belongs to the WD repeat SEC13 family. (393 aa)
	PIIN_01728	Probable SONA. (349 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00166	PIIN_00377	G4T568	G4T5U2	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.717
PIIN_00166	PIIN_00393	G4T568	G4T604	Probable karyopherin beta-1 subunit (Importin 95).	RanBD1 domain-containing protein.	0.717
PIIN_00166	PIIN_00478	G4T568	G4U2M2	Probable karyopherin beta-1 subunit (Importin 95).	Related to nuclear pore protein; Belongs to the WD repeat SEC13 family.	0.479
PIIN_00166	PIIN_00744	G4T568	G4T6I6	Probable karyopherin beta-1 subunit (Importin 95).	Probable CRM1-nuclear export factor, exportin.	0.677
PIIN_00166	PIIN_00882	G4T568	G4T6V2	Probable karyopherin beta-1 subunit (Importin 95).	Related to mRNA export factor mex67.	0.920
PIIN_00166	PIIN_01203	G4T568	G4T7T4	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.555
PIIN_00166	PIIN_01452	G4T568	G4T8L0	Probable karyopherin beta-1 subunit (Importin 95).	PARP catalytic domain-containing protein.	0.659
PIIN_00166	PIIN_01467	G4T568	G4T8J0	Probable karyopherin beta-1 subunit (Importin 95).	Probable ran GTPase activating protein 1.	0.789
PIIN_00166	PIIN_01651	G4T568	G4T938	Probable karyopherin beta-1 subunit (Importin 95).	TPR_MLP1_2 domain-containing protein.	0.562
PIIN_00166	PIIN_01728	G4T568	G4U393	Probable karyopherin beta-1 subunit (Importin 95).	Probable SONA.	0.697
PIIN_00166	PIIN_02000	G4T568	G4T9Z8	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.588
PIIN_00166	PIIN_03465	G4T568	G4TDW8	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.982
PIIN_00166	PIIN_03524	G4T568	G4TE53	Probable karyopherin beta-1 subunit (Importin 95).	NTF2 domain-containing protein.	0.509
PIIN_00166	PIIN_03575	G4T568	G4TE96	Probable karyopherin beta-1 subunit (Importin 95).	Nup54 domain-containing protein.	0.854
PIIN_00166	PIIN_04454	G4T568	G4TGT3	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.717
PIIN_00166	PIIN_04914	G4T568	G4TI38	Probable karyopherin beta-1 subunit (Importin 95).	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.993
PIIN_00166	PIIN_05171	G4T568	G4TIT8	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.800
PIIN_00166	PIIN_05209	G4T568	G4TIW5	Probable karyopherin beta-1 subunit (Importin 95).	Related to NUP170-nuclear pore protein.	0.630
PIIN_00166	PIIN_05355	G4T568	G4TJC7	Probable karyopherin beta-1 subunit (Importin 95).	Peptidase S59 domain-containing protein.	0.959
PIIN_00166	PIIN_05690	G4T568	G4TKA3	Probable karyopherin beta-1 subunit (Importin 95).	Uncharacterized protein.	0.659