10 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_00273	Related to glyoxal oxidase. (1517 aa)
	PIIN_01645	Uncharacterized protein. (739 aa)
	PIIN_02501	Uncharacterized protein. (131 aa)
	PIIN_02609	Uncharacterized protein. (372 aa)
	PIIN_02757	Uncharacterized protein. (182 aa)
	PIIN_03616	Related to Ribonuclease P protein subunit p30. (325 aa)
	PIIN_04078	Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family. (75 aa)
	PIIN_04271	Kri1_C domain-containing protein. (690 aa)
	PIIN_09202	Ribonuclease P protein subunit. (254 aa)
	PIIN_00703	Uncharacterized protein. (245 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00703	PIIN_01645	G4U318	G4T912	Uncharacterized protein.	Uncharacterized protein.	0.997
PIIN_00703	PIIN_02501	G4U318	G4TBG1	Uncharacterized protein.	Uncharacterized protein.	0.898
PIIN_00703	PIIN_03616	G4U318	G4TEC2	Uncharacterized protein.	Related to Ribonuclease P protein subunit p30.	0.996
PIIN_00703	PIIN_04271	G4U318	G4TG86	Uncharacterized protein.	Kri1_C domain-containing protein.	0.935
PIIN_00703	PIIN_09202	G4U318	G4TV75	Uncharacterized protein.	Ribonuclease P protein subunit.	0.997
PIIN_01645	PIIN_00703	G4T912	G4U318	Uncharacterized protein.	Uncharacterized protein.	0.997
PIIN_01645	PIIN_02501	G4T912	G4TBG1	Uncharacterized protein.	Uncharacterized protein.	0.996
PIIN_01645	PIIN_02609	G4T912	G4TBN8	Uncharacterized protein.	Uncharacterized protein.	0.885
PIIN_01645	PIIN_02757	G4T912	G4TC43	Uncharacterized protein.	Uncharacterized protein.	0.885
PIIN_01645	PIIN_03616	G4T912	G4TEC2	Uncharacterized protein.	Related to Ribonuclease P protein subunit p30.	0.998
PIIN_01645	PIIN_04271	G4T912	G4TG86	Uncharacterized protein.	Kri1_C domain-containing protein.	0.929
PIIN_01645	PIIN_09202	G4T912	G4TV75	Uncharacterized protein.	Ribonuclease P protein subunit.	0.998
PIIN_02501	PIIN_00703	G4TBG1	G4U318	Uncharacterized protein.	Uncharacterized protein.	0.898
PIIN_02501	PIIN_01645	G4TBG1	G4T912	Uncharacterized protein.	Uncharacterized protein.	0.996
PIIN_02501	PIIN_02609	G4TBG1	G4TBN8	Uncharacterized protein.	Uncharacterized protein.	0.908
PIIN_02501	PIIN_02757	G4TBG1	G4TC43	Uncharacterized protein.	Uncharacterized protein.	0.908
PIIN_02501	PIIN_03616	G4TBG1	G4TEC2	Uncharacterized protein.	Related to Ribonuclease P protein subunit p30.	0.997
PIIN_02501	PIIN_04078	G4TBG1	G4TFQ8	Uncharacterized protein.	Protein kish; Involved in the early part of the secretory pathway. Belongs to the KISH family.	0.796
PIIN_02501	PIIN_04271	G4TBG1	G4TG86	Uncharacterized protein.	Kri1_C domain-containing protein.	0.878
PIIN_02501	PIIN_09202	G4TBG1	G4TV75	Uncharacterized protein.	Ribonuclease P protein subunit.	0.998