(101 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Serendipita indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_00388	Probable RPL43B-60S large subunit ribosomal protein. (92 aa)
	PIIN_00406	Probable RPL11B-ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (176 aa)
	PIIN_00452	Probable ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family. (154 aa)
	PIIN_00453	Probable ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family. (116 aa)
	PIIN_00591	Uncharacterized protein. (346 aa)
	PIIN_00780	Uncharacterized protein. (69 aa)
	PIIN_00840	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (62 aa)
	PIIN_00853	Uncharacterized protein. (564 aa)
	PIIN_00914	Probable RPP0-acidic ribosomal protein L10.e. (367 aa)
	PIIN_00916	Probable RPP1A-60S large subunit acidic ribosomal protein a1; Belongs to the eukaryotic ribosomal protein P1/P2 family. (113 aa)
	PIIN_00972	Probable mrna export factor elf1. (1059 aa)
	PIIN_00958	Ribosomal_L28e domain-containing protein. (94 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	PIIN_01110	Related to 60S ribosomal protein L36-Cryptococcus neoformans. (93 aa)
	PIIN_01149	Uncharacterized protein. (320 aa)
	PIIN_01235	Probable RPL23A-60S large subunit ribosomal protein L23.e; Belongs to the universal ribosomal protein uL14 family. (139 aa)
	PIIN_01236	Probable 60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family. (84 aa)
	PIIN_01408	Probable ribosomal protein L35. (124 aa)
	PIIN_01523	Probable RPL40A-Ubiquitin. (130 aa)
	PIIN_01771	Probable 40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	PIIN_01772	Probable 60s ribosomal protein L21-A. (162 aa)
	PIIN_01838	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (196 aa)
	PIIN_02221	Probable ribosomal protein L24.e.A, cytosolic. (183 aa)
	PIIN_02309	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (95 aa)
	PIIN_02378	Probable YEF3-translation elongation factor eEF3. (1054 aa)
	PIIN_02388	Probable RPS18A-ribosomal protein S18.e.c4; Belongs to the universal ribosomal protein uS13 family. (157 aa)
	PIIN_02426	60S ribosomal protein L13; Belongs to the eukaryotic ribosomal protein eL13 family. (224 aa)
	PIIN_02428	Probable 40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PIIN_02502	Probable ribosomal protein S28; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	PIIN_02565	Probable ribosomal protein L22. (128 aa)
	PIIN_02693	40S ribosomal protein S27. (83 aa)
	PIIN_02720	Probable ribosomal protein L26. (136 aa)
	PIIN_02822	Probable RPL30-60S large subunit ribosomal protein L30.e. (114 aa)
	PIIN_03002	Probable 60S ribosomal protein L32. (146 aa)
	PIIN_03006	Probable ribosomal protein L13a; Belongs to the universal ribosomal protein uL13 family. (200 aa)
	PIIN_03011	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
	PIIN_03330	HABP4_PAI-RBP1 domain-containing protein. (348 aa)
	PIIN_03388	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (129 aa)
	PIIN_03472	Related to MRPS8-mitochondrial ribosomal protein, small subunit. (155 aa)
	PIIN_03499	Probable 60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	PIIN_03638	Probable 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	PIIN_03840	Probable ribosomal protein S28B. (70 aa)
	PIIN_03858	Probable ribosomal protein L34.e. (113 aa)
	PIIN_04023	Probable ribosomal protein S4.e, cytosolic. (74 aa)
	PIIN_04268	Probable RPS19B-ribosomal protein S19.e, cytosolic. (157 aa)
	PIIN_04383	Probable 40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
	PIIN_04422	Probable RPL9A-ribosomal protein L9.e. (187 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	PIIN_04534	Probable 60S large subunit ribosomal protein L6. (242 aa)
	PIIN_04681	Probable ubiquitin/ribosomal protein S27a fusion protein. (158 aa)
	PIIN_04778	Probable RPL33B-ribosomal protein L35a.e.c15. (161 aa)
	PIIN_04890	Probable eukaryotic translation initiation factor 1a; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits. (143 aa)
	PIIN_04956	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (171 aa)
	PIIN_05020	CIA30 domain-containing protein. (200 aa)
	PIIN_05229	Uncharacterized protein. (1175 aa)
	PIIN_05375	Uncharacterized protein. (346 aa)
	PIIN_05498	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (147 aa)
	PIIN_05517	Uncharacterized protein. (879 aa)
	PIIN_05987	Ribosomal protein L37; Binds to the 23S rRNA. (94 aa)
	PIIN_06078	Probable RPL42B-ribosomal protein L36a.e; Belongs to the eukaryotic ribosomal protein eL42 family. (116 aa)
	PIIN_06110	Uncharacterized protein. (453 aa)
	PIIN_06139	Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (268 aa)
	PIIN_06228	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (133 aa)
	PIIN_06363	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	PIIN_06369	Uncharacterized protein. (582 aa)
	PIIN_06387	Probable RPL14B-ribosomal protein. (138 aa)
	PIIN_06663	Probable RPL8B-60s large subunit ribosomal protein L7a.e.B. (281 aa)
	PIIN_06696	Uncharacterized protein. (384 aa)
	PIIN_06728	Probable RPL10-60S large subunit ribosomal protein L10. (216 aa)
	PIIN_06986	Related to ribosomal protein S4, mitochondrial. (193 aa)
	PIIN_06997	Probable 60s ribosomal protein L7 subunit. (250 aa)
	PIIN_07120	Related to ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. (188 aa)
	PIIN_07458	Probable RPL28-60S large subunit ribosomal protein L27a.e; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	PIIN_07493	Probable RPS11B-ribosomal protein S11B; Belongs to the universal ribosomal protein uS17 family. (154 aa)
	PIIN_07819	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (194 aa)
	PIIN_07963	Probable 40s ribosomal protein s20. (124 aa)
	PIIN_08072	Probable RPL4A-ribosomal protein L4-A. (370 aa)
	PIIN_08083	Probable RPL5-60S large subunit ribosomal protein L5.e. (314 aa)
	PIIN_08498	60S ribosomal protein L27; Belongs to the eukaryotic ribosomal protein eL27 family. (136 aa)
	PIIN_08675	Probable CPC2 protein, guanine nucleotide-binding protein beta subunit-like. (318 aa)
	PIIN_08765	Uncharacterized protein. (123 aa)
	PIIN_08776	Uncharacterized protein. (1300 aa)
	PIIN_08860	Probable 40s ribosomal protein S13.e; Belongs to the universal ribosomal protein uS15 family. (166 aa)
	PIIN_08861	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (238 aa)
	PIIN_09135	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (201 aa)
	PIIN_09138	Uncharacterized protein. (478 aa)
	PIIN_09141	Uncharacterized protein. (494 aa)
	PIIN_09249	Probable RPL2A-ribosomal protein L8.e. (254 aa)
	PIIN_09510	Probable RPL17A-ribosomal protein L17.e; Belongs to the universal ribosomal protein uL22 family. (189 aa)
	PIIN_09555	Probable 40S Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (92 aa)
	PIIN_09589	Probable RPL25-ribosomal protein L23a.e; Belongs to the universal ribosomal protein uL23 family. (152 aa)
	PIIN_09901	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (133 aa)
	PIIN_10388	Probable 40S ribosomal protein S10. (153 aa)
	PIIN_10442	Related to CRP-2 40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PIIN_10574	Probable 60S ribosomal protein L31. (162 aa)
	PIIN_11110	Probable RPS8A-ribosomal protein S8.e. (121 aa)
	PIIN_03435	Probable RPS17B-ribosomal protein S17.e.B. (145 aa)
	PIIN_03436	Probable RPS22A-ribosomal protein S15a.e.c10, cytosolic; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PIIN_00515	Uncharacterized protein. (91 aa)
	PIIN_01756	Probable ribosomal protein L10a.e, cytosolic. (232 aa)
	PIIN_01749	Probable RPL3-60s ribosomal protein l3; Belongs to the universal ribosomal protein uL3 family. (360 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00388	PIIN_00406	G4T5W5	G4T5X4	Probable RPL43B-60S large subunit ribosomal protein.	Probable RPL11B-ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.837
PIIN_00388	PIIN_00452	G4T5W5	G4T638	Probable RPL43B-60S large subunit ribosomal protein.	Probable ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family.	0.937
PIIN_00388	PIIN_00453	G4T5W5	G4T639	Probable RPL43B-60S large subunit ribosomal protein.	Probable ribosomal protein P2; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.928
PIIN_00388	PIIN_00515	G4T5W5	G4U2P4	Probable RPL43B-60S large subunit ribosomal protein.	Uncharacterized protein.	0.927
PIIN_00388	PIIN_00591	G4T5W5	G4T6A9	Probable RPL43B-60S large subunit ribosomal protein.	Uncharacterized protein.	0.803
PIIN_00388	PIIN_00780	G4T5W5	G4T6F9	Probable RPL43B-60S large subunit ribosomal protein.	Uncharacterized protein.	0.930
PIIN_00388	PIIN_00840	G4T5W5	G4T6P7	Probable RPL43B-60S large subunit ribosomal protein.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.933
PIIN_00388	PIIN_00853	G4T5W5	G4T6T8	Probable RPL43B-60S large subunit ribosomal protein.	Uncharacterized protein.	0.776
PIIN_00388	PIIN_00914	G4T5W5	G4T6X4	Probable RPL43B-60S large subunit ribosomal protein.	Probable RPP0-acidic ribosomal protein L10.e.	0.906
PIIN_00388	PIIN_00916	G4T5W5	G4T708	Probable RPL43B-60S large subunit ribosomal protein.	Probable RPP1A-60S large subunit acidic ribosomal protein a1; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.928
PIIN_00388	PIIN_00958	G4T5W5	G4T791	Probable RPL43B-60S large subunit ribosomal protein.	Ribosomal_L28e domain-containing protein.	0.927
PIIN_00388	PIIN_00972	G4T5W5	G4T756	Probable RPL43B-60S large subunit ribosomal protein.	Probable mrna export factor elf1.	0.989
PIIN_00388	PIIN_01110	G4T5W5	G4T7I7	Probable RPL43B-60S large subunit ribosomal protein.	Related to 60S ribosomal protein L36-Cryptococcus neoformans.	0.929
PIIN_00388	PIIN_01149	G4T5W5	G4T7P5	Probable RPL43B-60S large subunit ribosomal protein.	Uncharacterized protein.	0.846
PIIN_00388	PIIN_01235	G4T5W5	G4T7X3	Probable RPL43B-60S large subunit ribosomal protein.	Probable RPL23A-60S large subunit ribosomal protein L23.e; Belongs to the universal ribosomal protein uL14 family.	0.924
PIIN_00388	PIIN_01236	G4T5W5	G4T7X4	Probable RPL43B-60S large subunit ribosomal protein.	Probable 60S ribosomal protein L38; Belongs to the eukaryotic ribosomal protein eL38 family.	0.931
PIIN_00388	PIIN_01408	G4T5W5	G4T8C7	Probable RPL43B-60S large subunit ribosomal protein.	Probable ribosomal protein L35.	0.923
PIIN_00388	PIIN_01523	G4T5W5	G4T8R6	Probable RPL43B-60S large subunit ribosomal protein.	Probable RPL40A-Ubiquitin.	0.776
PIIN_00388	PIIN_01749	G4T5W5	G4U3C8	Probable RPL43B-60S large subunit ribosomal protein.	Probable RPL3-60s ribosomal protein l3; Belongs to the universal ribosomal protein uL3 family.	0.926
PIIN_00388	PIIN_01756	G4T5W5	G4U3B0	Probable RPL43B-60S large subunit ribosomal protein.	Probable ribosomal protein L10a.e, cytosolic.	0.909