STRINGSTRING
PIIN_00044 PIIN_00044 PIIN_00010 PIIN_00010 PIIN_00160 PIIN_00160 PIIN_00213 PIIN_00213 PIIN_00287 PIIN_00287 PIIN_00293 PIIN_00293 TIF6 TIF6 PIIN_00342 PIIN_00342 PIIN_00372 PIIN_00372 PIIN_00440 PIIN_00440 PIIN_00427 PIIN_00427 PIIN_00460 PIIN_00460 PIIN_00606 PIIN_00606 PIIN_00729 PIIN_00729 PIIN_00736 PIIN_00736 PIIN_00779 PIIN_00779 PIIN_00831 PIIN_00831 PIIN_00885 PIIN_00885 PIIN_01032 PIIN_01032 PIIN_01117 PIIN_01117 PIIN_01163 PIIN_01163 PIIN_01226 PIIN_01226 PIIN_01228 PIIN_01228 PIIN_01213 PIIN_01213 PIIN_01281 PIIN_01281 PIIN_01284 PIIN_01284 PIIN_01299 PIIN_01299 PIIN_01260 PIIN_01260 PIIN_11757 PIIN_11757 PIIN_01330 PIIN_01330 PIIN_01336 PIIN_01336 PIIN_11758 PIIN_11758 PIIN_01440 PIIN_01440 PIIN_01509 PIIN_01509 PIIN_01649 PIIN_01649 PIIN_01654 PIIN_01654 PIIN_01674 PIIN_01674 PIIN_01705 PIIN_01705 PIIN_01677 PIIN_01677 PIIN_01695 PIIN_01695 PIIN_01711 PIIN_01711 PIIN_01888 PIIN_01888 PIIN_02064 PIIN_02064 PIIN_02164 PIIN_02164 PIIN_02182 PIIN_02182 PIIN_02255 PIIN_02255 PIIN_02358 PIIN_02358 PIIN_02398 PIIN_02398 PIIN_02603 PIIN_02603 PIIN_02608 PIIN_02608 PIIN_02612 PIIN_02612 PIIN_02675 PIIN_02675 PIIN_02745 PIIN_02745 PIIN_02785 PIIN_02785 PIIN_02947 PIIN_02947 PIIN_03034 PIIN_03034 PIIN_03066 PIIN_03066 PIIN_03115 PIIN_03115 PIIN_03135 PIIN_03135 PIIN_03192 PIIN_03192 PIIN_03162 PIIN_03162 PIIN_03224 PIIN_03224 ERB1 ERB1 PIIN_03498 PIIN_03498 PIIN_03503 PIIN_03503 PIIN_03557 PIIN_03557 PIIN_03596 PIIN_03596 PIIN_03613 PIIN_03613 PIIN_03698 PIIN_03698 PIIN_03749 PIIN_03749 PIIN_03751 PIIN_03751 NAT10 NAT10 PIIN_04008 PIIN_04008 PIIN_04072 PIIN_04072 PIIN_04149 PIIN_04149 PIIN_04246 PIIN_04246 PIIN_04245 PIIN_04245 PIIN_04309 PIIN_04309 PIIN_04295 PIIN_04295 PIIN_04537 PIIN_04537 PIIN_04590 PIIN_04590 PIIN_04754 PIIN_04754 PIIN_04759 PIIN_04759 PIIN_04813 PIIN_04813 PIIN_04868 PIIN_04868 PIIN_04875 PIIN_04875 PIIN_04892 PIIN_04892 PIIN_04907 PIIN_04907 PIIN_05069 PIIN_05069 PIIN_05172 PIIN_05172 PIIN_05180 PIIN_05180 PIIN_05181 PIIN_05181 PIIN_05488 PIIN_05488 PIIN_05653 PIIN_05653 PIIN_05939 PIIN_05939 PIIN_06083 PIIN_06083 PIIN_06111 PIIN_06111 PIIN_06143 PIIN_06143 SPB1 SPB1 PIIN_06582 PIIN_06582 PIIN_06695 PIIN_06695 PIIN_06698 PIIN_06698 PIIN_06771 PIIN_06771 PIIN_06814 PIIN_06814 PIIN_06897 PIIN_06897 PIIN_06977 PIIN_06977 PIIN_06978 PIIN_06978 PIIN_07022 PIIN_07022 PIIN_07036 PIIN_07036 PIIN_07060 PIIN_07060 PIIN_07174 PIIN_07174 PIIN_07179 PIIN_07179 PIIN_07272 PIIN_07272 PIIN_07362 PIIN_07362 PIIN_07393 PIIN_07393 PIIN_07438 PIIN_07438 PIIN_07486 PIIN_07486 PIIN_07581 PIIN_07581 PIIN_07583 PIIN_07583 PIIN_07600 PIIN_07600 PIIN_07761 PIIN_07761 PIIN_07854 PIIN_07854 PIIN_07907 PIIN_07907 PIIN_08100 PIIN_08100 PIIN_08145 PIIN_08145 PIIN_08416 PIIN_08416 PIIN_08452 PIIN_08452 PIIN_08475 PIIN_08475 PIIN_09052 PIIN_09052 PIIN_09343 PIIN_09343 PIIN_09425 PIIN_09425 PIIN_09508 PIIN_09508 PIIN_09517 PIIN_09517 PIIN_09533 PIIN_09533 PIIN_09618 PIIN_09618 PIIN_09725 PIIN_09725 PIIN_09880 PIIN_09880 PIIN_09905 PIIN_09905 PIIN_11802 PIIN_11802 PIIN_10226 PIIN_10226 PIIN_10320 PIIN_10320 PIIN_10573 PIIN_10573 PIIN_10578 PIIN_10578 PIIN_10771 PIIN_10771 PIIN_11353 PIIN_11353 PIIN_11501 PIIN_11501 PIIN_02980 PIIN_02980 PIIN_03443 PIIN_03443 PIIN_11712 PIIN_11712 PIIN_00691 PIIN_00691
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PIIN_00044C2H2-type domain-containing protein. (473 aa)
PIIN_00010Probable IMP4-component of the U3 small nucleolar ribonucleoprotein. (288 aa)
PIIN_00160BP28CT domain-containing protein. (1961 aa)
PIIN_00213RRM domain-containing protein. (328 aa)
PIIN_00287Related to ATP-dependent helicase involved in rRNA processing; Belongs to the DEAD box helicase family. (571 aa)
PIIN_00293RIX1 domain-containing protein. (719 aa)
TIF6Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)
PIIN_00342Probable exosome complex exonuclease rrp41. (277 aa)
PIIN_00372Uncharacterized protein. (707 aa)
PIIN_00440Related to RNA helicase. (689 aa)
PIIN_00427Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (278 aa)
PIIN_00460Protein MAK16; Belongs to the MAK16 family. (325 aa)
PIIN_00606Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4811 aa)
PIIN_00729RNA helicase. (641 aa)
PIIN_00736Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA. (365 aa)
PIIN_00779Related to PITSLRE protein kinase isoforms. (375 aa)
PIIN_00831Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (757 aa)
PIIN_00885Related to NOP15-protein involved in 60S ribosomal subunit biogenesis. (360 aa)
PIIN_01032Related to SSF1-nucleolar protein involved in the assembly of the large ribosomal subunit. (404 aa)
PIIN_01117Uncharacterized protein. (121 aa)
PIIN_01163Related to NOC4-ribosome biogenesis protein. (564 aa)
PIIN_01226PUM-HD domain-containing protein. (653 aa)
PIIN_01228Uncharacterized protein. (388 aa)
PIIN_01213U3 small nucleolar RNA-associated protein 22. (1221 aa)
PIIN_01281Uncharacterized protein. (586 aa)
PIIN_01284Related to MNR2-Manganese resistance protein. (739 aa)
PIIN_01299U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (627 aa)
PIIN_01260annotation not available (272 aa)
PIIN_11757Uncharacterized protein. (205 aa)
PIIN_01330Related to RLP24-Ribosomal Like Protein 24, part of a pre-60S complex. (210 aa)
PIIN_01336Probable NOP1-fibrillarin. (309 aa)
PIIN_11758Probable LSG1-Large-Subunit GTPase involved in 60S ribosomal subunit biogenesis. (650 aa)
PIIN_01440Uncharacterized protein. (612 aa)
PIIN_01509Ipi1_N domain-containing protein. (721 aa)
PIIN_01649Related to osmosensing protein SGD1. (842 aa)
PIIN_01654Related to SAS10-involved in silencing. (677 aa)
PIIN_01674Related to CSL4-exosome core component. (211 aa)
PIIN_01705Related to MAK5-ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (703 aa)
PIIN_01677Probable DNA/RNA helicase (DEAD/H box family II). (1449 aa)
PIIN_0169560S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
PIIN_01711Related to RRP4-3`-5` exoribonuclease. (311 aa)
PIIN_01888Related to RRB1-involved in the regulation of ribosome biosynthesis. (533 aa)
PIIN_02064annotation not available (760 aa)
PIIN_02164Probable pectate lyase. (239 aa)
PIIN_02182RNA helicase. (793 aa)
PIIN_02255Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
PIIN_02358Related to EMG1-Protein required for ribosome biogenesis. (348 aa)
PIIN_02398Related to RRP5-processing of pre-ribosomal RNA. (1501 aa)
PIIN_02603Uncharacterized protein. (291 aa)
PIIN_02608Related to MAK11 protein (Maintenance of killer toxin-encoding satellite M1 dsRNA). (433 aa)
PIIN_02612Related to WD-repeat protein crb3. (477 aa)
PIIN_02675WD_REPEATS_REGION domain-containing protein. (591 aa)
PIIN_02745Related to curved dna-binding protein. (402 aa)
PIIN_02785RNase_PH domain-containing protein. (333 aa)
PIIN_02947DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1466 aa)
PIIN_03034Uncharacterized protein. (236 aa)
PIIN_03066Related to DRS1-RNA helicase of the DEAD box family; Belongs to the DEAD box helicase family. (767 aa)
PIIN_03115Uncharacterized protein. (446 aa)
PIIN_03135Probable NOP2-nucleolar protein; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family. (683 aa)
PIIN_03192Probable ROK1-ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (561 aa)
PIIN_03162Related to DNA polymerase V. (1180 aa)
PIIN_03224Related to NOC2-Crucial for intranuclear movement of ribosomal particles. (725 aa)
ERB1Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (757 aa)
PIIN_03498Uncharacterized protein. (745 aa)
PIIN_03503Uncharacterized protein. (373 aa)
PIIN_03557Related to RRP9-protein associated with the U3 small nucleolar RNA. (560 aa)
PIIN_03596Related to S. pombe beta-transducin. (955 aa)
PIIN_03613Related to BRX1-Essential nucleolar protein required for biogenesis of the 60S ribosomal subunit. (319 aa)
PIIN_03698Probable RRP45-Exosome complex exonuclease. (313 aa)
PIIN_03749Related to GTP-binding protein. (688 aa)
PIIN_03751Uncharacterized protein. (967 aa)
NAT10RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1111 aa)
PIIN_04008Related to UTP6-U3 snoRNP protein. (654 aa)
PIIN_04072U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (623 aa)
PIIN_04149Related to protein RPF2 involved in ribosomal large subunit assembly and maintenance. (356 aa)
PIIN_04246Related to microtubule binding protein YTM1-Laccaria bicolor. (215 aa)
PIIN_04245Fcf2 domain-containing protein. (265 aa)
PIIN_04309Probable RNA-binding protein. (799 aa)
PIIN_0429560S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (570 aa)
PIIN_04537Related to DIP2-Dom34p-interacting protein. (912 aa)
PIIN_04590Probable MTR4-involved in nucleocytoplasmic transport of mRNA. (1010 aa)
PIIN_04754Related to ECM16-putative DEAH-box RNA helicase. (1200 aa)
PIIN_04759Related to EBP2-required for pre-rRNA processing and ribosomal subunit assembly. (390 aa)
PIIN_04813Related to NMD5-Nam7p interacting protein (Importin-8). (1059 aa)
PIIN_04868Uncharacterized protein. (312 aa)
PIIN_04875Related to Exosome complex exonuclease RRP43. (279 aa)
PIIN_04892Uncharacterized protein. (484 aa)
PIIN_04907RRM domain-containing protein. (627 aa)
PIIN_05069Related to Streptococcus M protein. (662 aa)
PIIN_05172Uncharacterized protein. (648 aa)
PIIN_05180KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (350 aa)
PIIN_05181Probable NOP58-required for pre-18S rRNA processing. (587 aa)
PIIN_05488DUF2470 domain-containing protein. (225 aa)
PIIN_05653Probable periodic tryptophan protein PWP2. (909 aa)
PIIN_05939Related to UTP4-U3 snoRNP protein. (806 aa)
PIIN_06083Related to RCL1-RNA terminal phosphate cyclase-like protein. (355 aa)
PIIN_06111DRIM domain-containing protein. (2573 aa)
PIIN_06143annotation not available (511 aa)
SPB1AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (1111 aa)
PIIN_06582RNA helicase. (769 aa)
PIIN_06695annotation not available (196 aa)
PIIN_06698Uncharacterized protein. (377 aa)
PIIN_06771Uncharacterized protein. (539 aa)
PIIN_06814Probable DIS3 3`-5` exoribonuclease required for 3` end formation of 5.8S rRNA; Belongs to the RNR ribonuclease family. (1006 aa)
PIIN_06897Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (435 aa)
PIIN_06977Probable pectate lyase. (244 aa)
PIIN_06978Probable pectate lyase. (244 aa)
PIIN_07022ATP-dependent RNA helicase DBP10. (955 aa)
PIIN_07036RNase_PH domain-containing protein. (267 aa)
PIIN_07060Related to SOF1-involved in 18S pre-rRNA production. (475 aa)
PIIN_07174Probable NSA2-involved in biogenesis of ribosomal large subunit. (219 aa)
PIIN_07179Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily. (666 aa)
PIIN_07272Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis. (901 aa)
PIIN_07362Probable DEAD box protein (Putative RNA helicase); Belongs to the DEAD box helicase family. (458 aa)
PIIN_07393Related to NUG1-Nuclear GTPase (Involved in Ribosome biogenesis). (548 aa)
PIIN_07438Related to SKI2-antiviral protein and putative helicase. (1789 aa)
PIIN_07486RNase_PH domain-containing protein. (244 aa)
PIIN_07581Nucleolar GTP-binding protein 2; GTPase that associates with pre-60S ribosomal subunits in the nucleolus and is required for their nuclear export and maturation. Belongs to the TRAFAC class YlqF/YawG GTPase family. NOG2 subfamily. (550 aa)
PIIN_07583Related to UTP13-U3 snoRNP protein. (837 aa)
PIIN_07600Related to ESF2-Eighteen S rRNA processing Factor. (204 aa)
PIIN_07761Probable IMP3-component of the U3 small nucleolar ribonucleoprotein. (182 aa)
PIIN_07854Related to DBP3-Putative RNA helicase required for pre-rRNA processing; Belongs to the DEAD box helicase family. (556 aa)
PIIN_07907Related to Pwp2p. (524 aa)
PIIN_08100Related to RRP1-involved in processing rRNA species to mature rRNAs. (263 aa)
PIIN_08145Probable SIK1-involved in pre-rRNA processing. (526 aa)
PIIN_08416Related to UTP7-U3 snoRNP protein. (623 aa)
PIIN_08452Uncharacterized protein. (915 aa)
PIIN_08475Uncharacterized protein. (463 aa)
PIIN_09052Related to UTP18-Possible U3 snoRNP protein involved in maturation of pre-18S rRNA. (542 aa)
PIIN_09343annotation not available (702 aa)
PIIN_09425Probable ATP dependent RNA helicase. (705 aa)
PIIN_09508Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (258 aa)
PIIN_09517Related to ATP-dependent RNA helicase. (1361 aa)
PIIN_09533Related to RRP40-protein involved in ribosomal RNA processing, component of the exosome complex. (230 aa)
PIIN_09618Related to NOP14-nuclear and nucleolar protein with possible role in ribosome biogenesis. (221 aa)
PIIN_09725Uncharacterized protein. (775 aa)
PIIN_09880WD_REPEATS_REGION domain-containing protein. (240 aa)
PIIN_09905Related to cgi-94 protein. (319 aa)
PIIN_11802Related to pescadillo development protein. (452 aa)
PIIN_10226Related to Nucleolar protein NOP4. (850 aa)
PIIN_10320Related to NOP14-nuclear and nucleolar protein with possible role in ribosome biogenesis. (684 aa)
PIIN_10573Related to WD repeat protein PWP1. (481 aa)
PIIN_10578WD_REPEATS_REGION domain-containing protein. (158 aa)
PIIN_10771Sof1 domain-containing protein. (61 aa)
PIIN_11353C2H2-type domain-containing protein. (125 aa)
PIIN_11501Related to MPP10-component of the U3 small nucleolar ribonucleoprotein. (202 aa)
PIIN_02980Related to MAK21-protein required for 60S ribosomal subunit biogenesis. (1037 aa)
PIIN_03443Nucleolar complex-associated protein 3; Required for synthesis of 60S ribosomal subunits and the transport of pre-ribosomes from the nucleoplasm to the cytoplasm. Belongs to the CBF/MAK21 family. (787 aa)
PIIN_11712Related to RPF1-involved in the assembly of the large ribosomal subunit. (347 aa)
PIIN_00691RNA helicase. (559 aa)
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
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