5 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_00736	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA. (365 aa)
	PIIN_02064	annotation not available (760 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1111 aa)
	PIIN_07272	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis. (901 aa)
	PIIN_08475	Uncharacterized protein. (463 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
NAT10	PIIN_00736	G4TFH1	G4T6H8	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	0.989
NAT10	PIIN_02064	G4TFH1	G4TA39	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	annotation not available	0.998
NAT10	PIIN_07272	G4TFH1	G4TPS4	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.999
NAT10	PIIN_08475	G4TFH1	G4TT80	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	Uncharacterized protein.	0.997
PIIN_00736	NAT10	G4T6H8	G4TFH1	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.989
PIIN_00736	PIIN_02064	G4T6H8	G4TA39	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	annotation not available	0.997
PIIN_00736	PIIN_07272	G4T6H8	G4TPS4	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.996
PIIN_00736	PIIN_08475	G4T6H8	G4TT80	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	Uncharacterized protein.	0.996
PIIN_02064	NAT10	G4TA39	G4TFH1	annotation not available	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.998
PIIN_02064	PIIN_00736	G4TA39	G4T6H8	annotation not available	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	0.997
PIIN_02064	PIIN_07272	G4TA39	G4TPS4	annotation not available	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.998
PIIN_02064	PIIN_08475	G4TA39	G4TT80	annotation not available	Uncharacterized protein.	0.997
PIIN_07272	NAT10	G4TPS4	G4TFH1	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.999
PIIN_07272	PIIN_00736	G4TPS4	G4T6H8	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	0.996
PIIN_07272	PIIN_02064	G4TPS4	G4TA39	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	annotation not available	0.998
PIIN_07272	PIIN_08475	G4TPS4	G4TT80	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	Uncharacterized protein.	0.996
PIIN_08475	NAT10	G4TT80	G4TFH1	Uncharacterized protein.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.997
PIIN_08475	PIIN_00736	G4TT80	G4T6H8	Uncharacterized protein.	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	0.996
PIIN_08475	PIIN_02064	G4TT80	G4TA39	Uncharacterized protein.	annotation not available	0.997
PIIN_08475	PIIN_07272	G4TT80	G4TPS4	Uncharacterized protein.	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.996