13 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_00044	C2H2-type domain-containing protein. (473 aa)
	PIIN_00293	RIX1 domain-containing protein. (719 aa)
	TIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family. (245 aa)
	PIIN_00427	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily. (278 aa)
	PIIN_00606	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family. (4811 aa)
	PIIN_00831	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family. (757 aa)
	PIIN_11758	Probable LSG1-Large-Subunit GTPase involved in 60S ribosomal subunit biogenesis. (650 aa)
	PIIN_01509	Ipi1_N domain-containing protein. (721 aa)
	PIIN_02612	Related to WD-repeat protein crb3. (477 aa)
	PIIN_02745	Related to curved dna-binding protein. (402 aa)
	PIIN_04295	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family. (570 aa)
	PIIN_06143	annotation not available (511 aa)
	PIIN_11353	C2H2-type domain-containing protein. (125 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00044	PIIN_00427	G4T4V5	G4T622	C2H2-type domain-containing protein.	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	0.834
PIIN_00044	PIIN_00831	G4T4V5	G4T6S9	C2H2-type domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.443
PIIN_00044	PIIN_02745	G4T4V5	G4TC38	C2H2-type domain-containing protein.	Related to curved dna-binding protein.	0.968
PIIN_00044	PIIN_04295	G4T4V5	G4TGC9	C2H2-type domain-containing protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.982
PIIN_00044	PIIN_06143	G4T4V5	G4TLL5	C2H2-type domain-containing protein.	annotation not available	0.624
PIIN_00044	PIIN_11353	G4T4V5	G4U1D3	C2H2-type domain-containing protein.	C2H2-type domain-containing protein.	0.760
PIIN_00044	PIIN_11758	G4T4V5	G4T8C2	C2H2-type domain-containing protein.	Probable LSG1-Large-Subunit GTPase involved in 60S ribosomal subunit biogenesis.	0.973
PIIN_00044	TIF6	G4T4V5	G4T5R8	C2H2-type domain-containing protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.968
PIIN_00293	PIIN_00606	G4T5M7	G4T682	RIX1 domain-containing protein.	Midasin; Nuclear chaperone required for maturation and nuclear export of pre-60S ribosome subunits; Belongs to the midasin family.	0.956
PIIN_00293	PIIN_00831	G4T5M7	G4T6S9	RIX1 domain-containing protein.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.971
PIIN_00293	PIIN_01509	G4T5M7	G4T8T4	RIX1 domain-containing protein.	Ipi1_N domain-containing protein.	0.989
PIIN_00293	PIIN_02612	G4T5M7	G4TBQ6	RIX1 domain-containing protein.	Related to WD-repeat protein crb3.	0.996
PIIN_00293	PIIN_02745	G4T5M7	G4TC38	RIX1 domain-containing protein.	Related to curved dna-binding protein.	0.986
PIIN_00293	PIIN_04295	G4T5M7	G4TGC9	RIX1 domain-containing protein.	60S ribosomal export protein NMD3; Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit; Belongs to the NMD3 family.	0.604
PIIN_00293	PIIN_06143	G4T5M7	G4TLL5	RIX1 domain-containing protein.	annotation not available	0.965
PIIN_00293	PIIN_11353	G4T5M7	G4U1D3	RIX1 domain-containing protein.	C2H2-type domain-containing protein.	0.950
PIIN_00293	PIIN_11758	G4T5M7	G4T8C2	RIX1 domain-containing protein.	Probable LSG1-Large-Subunit GTPase involved in 60S ribosomal subunit biogenesis.	0.611
PIIN_00293	TIF6	G4T5M7	G4T5R8	RIX1 domain-containing protein.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. Is also involved in ribosome biogenesis. Associates with pre-60S subunits in the nucleus and is involved in its nuclear export; Belongs to the eIF-6 family.	0.937
PIIN_00427	PIIN_00044	G4T622	G4T4V5	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	C2H2-type domain-containing protein.	0.834
PIIN_00427	PIIN_00831	G4T622	G4T6S9	Uncharacterized protein; Belongs to the protein-tyrosine phosphatase family. Non- receptor class dual specificity subfamily.	Protein SDA1; Required for 60S pre-ribosomal subunits export to the cytoplasm; Belongs to the SDA1 family.	0.500