STRINGSTRING
PIIN_09229 PIIN_09229 PIIN_00072 PIIN_00072 PIIN_00102 PIIN_00102 PIIN_00375 PIIN_00375 PIIN_00635 PIIN_00635 PIIN_00738 PIIN_00738 PIIN_01596 PIIN_01596 PIIN_02433 PIIN_02433 PIIN_02947 PIIN_02947 PIIN_03372 PIIN_03372 PIIN_03556 PIIN_03556 PIIN_05729 PIIN_05729 PIIN_06534 PIIN_06534 PIIN_06810 PIIN_06810 PIIN_06814 PIIN_06814 PIIN_06938 PIIN_06938 PIIN_10784 PIIN_10784
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PIIN_09229Related to nucleolar 100K polymyositis-scleroderma protein. (847 aa)
PIIN_00072Related to REX2-Oligoribonuclease, mitochondrial. (243 aa)
PIIN_00102Related to endonuclease/exonuclease/phosphatase family protein-Penicillium marneffei. (296 aa)
PIIN_003755'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins. (1438 aa)
PIIN_00635Exonuclease domain-containing protein. (301 aa)
PIIN_00738Related to PAN2-component of Pab1p-stimulated poly(A) ribonuclease. (1054 aa)
PIIN_01596Related to ribonuclease H. (656 aa)
PIIN_02433Endo/exonuclease/phosphatase domain-containing protein. (260 aa)
PIIN_02947DIS3-like exonuclease 2; 3'-5'-exoribonuclease that specifically recognizes RNAs polyuridylated at their 3' end and mediates their degradation. Component of an exosome-independent RNA degradation pathway that mediates degradation of cytoplasmic mRNAs that have been deadenylated and subsequently uridylated at their 3'. (1466 aa)
PIIN_03372RNB domain-containing protein. (872 aa)
PIIN_035563'-5' exonuclease domain-containing protein. (433 aa)
PIIN_05729Related to CCR4-component of the major cytoplasmic deadenylase (C-terminal). (618 aa)
PIIN_06534Related to exonuclease, RNase T and DNA polymerase III-Flavobacterium johnsoniae. (221 aa)
PIIN_06810Uncharacterized protein. (525 aa)
PIIN_06814Probable DIS3 3`-5` exoribonuclease required for 3` end formation of 5.8S rRNA; Belongs to the RNR ribonuclease family. (1006 aa)
PIIN_06938Uncharacterized protein. (191 aa)
PIIN_10784Probable CCR4-NOT transcription complex, subunit 7. (371 aa)
Your Current Organism:
Serendipita indica
NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.