9 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_07272	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis. (901 aa)
	PIIN_06582	RNA helicase. (769 aa)
	PIIN_04072	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (623 aa)
	PIIN_03557	Related to RRP9-protein associated with the U3 small nucleolar RNA. (560 aa)
	PIIN_10578	WD_REPEATS_REGION domain-containing protein. (158 aa)
	PIIN_10793	Related to TSR1-protein involved in 20S rRNA accumulation. (372 aa)
	PIIN_11111	Related to TSR1-protein involved in 20S rRNA accumulation. (157 aa)
	PIIN_09443	Related to TSR1-protein involved in 20S rRNA accumulation. (673 aa)
	PIIN_07583	Related to UTP13-U3 snoRNP protein. (837 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_03557	PIIN_04072	G4TE88	G4TFQ2	Related to RRP9-protein associated with the U3 small nucleolar RNA.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.876
PIIN_03557	PIIN_06582	G4TE88	G4TMV5	Related to RRP9-protein associated with the U3 small nucleolar RNA.	RNA helicase.	0.635
PIIN_03557	PIIN_07272	G4TE88	G4TPS4	Related to RRP9-protein associated with the U3 small nucleolar RNA.	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.994
PIIN_03557	PIIN_07583	G4TE88	G4TQP1	Related to RRP9-protein associated with the U3 small nucleolar RNA.	Related to UTP13-U3 snoRNP protein.	0.996
PIIN_03557	PIIN_09443	G4TE88	G4TVW7	Related to RRP9-protein associated with the U3 small nucleolar RNA.	Related to TSR1-protein involved in 20S rRNA accumulation.	0.629
PIIN_03557	PIIN_10578	G4TE88	G4TZ43	Related to RRP9-protein associated with the U3 small nucleolar RNA.	WD_REPEATS_REGION domain-containing protein.	0.976
PIIN_03557	PIIN_10793	G4TE88	G4TZR4	Related to RRP9-protein associated with the U3 small nucleolar RNA.	Related to TSR1-protein involved in 20S rRNA accumulation.	0.629
PIIN_03557	PIIN_11111	G4TE88	G4U0N5	Related to RRP9-protein associated with the U3 small nucleolar RNA.	Related to TSR1-protein involved in 20S rRNA accumulation.	0.629
PIIN_04072	PIIN_03557	G4TFQ2	G4TE88	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Related to RRP9-protein associated with the U3 small nucleolar RNA.	0.876
PIIN_04072	PIIN_06582	G4TFQ2	G4TMV5	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	RNA helicase.	0.818
PIIN_04072	PIIN_07272	G4TFQ2	G4TPS4	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.524
PIIN_04072	PIIN_07583	G4TFQ2	G4TQP1	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Related to UTP13-U3 snoRNP protein.	0.723
PIIN_04072	PIIN_09443	G4TFQ2	G4TVW7	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Related to TSR1-protein involved in 20S rRNA accumulation.	0.738
PIIN_04072	PIIN_10578	G4TFQ2	G4TZ43	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	WD_REPEATS_REGION domain-containing protein.	0.641
PIIN_04072	PIIN_10793	G4TFQ2	G4TZR4	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Related to TSR1-protein involved in 20S rRNA accumulation.	0.738
PIIN_04072	PIIN_11111	G4TFQ2	G4U0N5	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	Related to TSR1-protein involved in 20S rRNA accumulation.	0.738
PIIN_06582	PIIN_03557	G4TMV5	G4TE88	RNA helicase.	Related to RRP9-protein associated with the U3 small nucleolar RNA.	0.635
PIIN_06582	PIIN_04072	G4TMV5	G4TFQ2	RNA helicase.	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2.	0.818
PIIN_06582	PIIN_07272	G4TMV5	G4TPS4	RNA helicase.	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis.	0.931
PIIN_06582	PIIN_07583	G4TMV5	G4TQP1	RNA helicase.	Related to UTP13-U3 snoRNP protein.	0.719