(26 nodes) Positive regulation of proteolysis network (Serendipita indica)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_00056	RBR-type E3 ubiquitin transferase. (539 aa)
	PIIN_00609	RPN13_C domain-containing protein. (290 aa)
	PIIN_02696	Uncharacterized protein. (350 aa)
	PIIN_02692	Uncharacterized protein. (1879 aa)
	PIIN_03123	Probable RPT3-26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (445 aa)
	PIIN_03182	Uncharacterized protein. (1852 aa)
	PIIN_03284	Probable RPT6-26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (523 aa)
	PIIN_03287	RBR-type E3 ubiquitin transferase. (343 aa)
	PIIN_03347	RBR-type E3 ubiquitin transferase. (460 aa)
	PIIN_04090	Probable mitochondrial processing peptidase alpha chain; Belongs to the peptidase M16 family. (530 aa)
	PIIN_04122	Related to cell cycle protein p55cdc. (827 aa)
	PIIN_04415	Uncharacterized protein. (255 aa)
	PIIN_04654	Probable FZR protein (Fizzy-related protein). (618 aa)
	PIIN_05143	RBR-type E3 ubiquitin transferase. (778 aa)
	PIIN_11690	RBR-type E3 ubiquitin transferase. (1044 aa)
	PIIN_05291	Proteasome subunit beta. (205 aa)
	PIIN_05486	RBR-type E3 ubiquitin transferase. (473 aa)
	PIIN_05518	AB hydrolase-1 domain-containing protein. (243 aa)
	PIIN_06313	Probable RPT1-26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (454 aa)
	PIIN_06337	Uncharacterized protein. (669 aa)
	PIIN_06459	Probable RPT5-26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (458 aa)
	PIIN_08403	Probable RPT4-26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (389 aa)
	PIIN_08955	Uncharacterized protein. (450 aa)
	PIIN_09165	RBR-type E3 ubiquitin transferase. (475 aa)
	PIIN_09200	Probable RPT2-26S proteasome regulatory subunit; Belongs to the AAA ATPase family. (418 aa)
	PIIN_00520	RING-type domain-containing protein. (766 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00056	PIIN_09165	G4T524	G4TV38	RBR-type E3 ubiquitin transferase.	RBR-type E3 ubiquitin transferase.	0.473
PIIN_00520	PIIN_09165	G4U2U1	G4TV38	RING-type domain-containing protein.	RBR-type E3 ubiquitin transferase.	0.414
PIIN_00609	PIIN_02692	G4T6B8	G4TC06	RPN13_C domain-containing protein.	Uncharacterized protein.	0.789
PIIN_00609	PIIN_02696	G4T6B8	G4TBY4	RPN13_C domain-containing protein.	Uncharacterized protein.	0.789
PIIN_00609	PIIN_03123	G4T6B8	G4TD50	RPN13_C domain-containing protein.	Probable RPT3-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.997
PIIN_00609	PIIN_03182	G4T6B8	G4TD96	RPN13_C domain-containing protein.	Uncharacterized protein.	0.789
PIIN_00609	PIIN_03284	G4T6B8	G4TDJ1	RPN13_C domain-containing protein.	Probable RPT6-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.994
PIIN_00609	PIIN_05291	G4T6B8	G4TJ59	RPN13_C domain-containing protein.	Proteasome subunit beta.	0.975
PIIN_00609	PIIN_06313	G4T6B8	G4TM36	RPN13_C domain-containing protein.	Probable RPT1-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.995
PIIN_00609	PIIN_06459	G4T6B8	G4TMH9	RPN13_C domain-containing protein.	Probable RPT5-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.994
PIIN_00609	PIIN_08403	G4T6B8	G4TT04	RPN13_C domain-containing protein.	Probable RPT4-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.994
PIIN_00609	PIIN_09200	G4T6B8	G4TV73	RPN13_C domain-containing protein.	Probable RPT2-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.998
PIIN_02692	PIIN_00609	G4TC06	G4T6B8	Uncharacterized protein.	RPN13_C domain-containing protein.	0.789
PIIN_02692	PIIN_02696	G4TC06	G4TBY4	Uncharacterized protein.	Uncharacterized protein.	0.433
PIIN_02692	PIIN_03123	G4TC06	G4TD50	Uncharacterized protein.	Probable RPT3-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.766
PIIN_02692	PIIN_03182	G4TC06	G4TD96	Uncharacterized protein.	Uncharacterized protein.	0.812
PIIN_02692	PIIN_03284	G4TC06	G4TDJ1	Uncharacterized protein.	Probable RPT6-26S proteasome regulatory subunit; Belongs to the AAA ATPase family.	0.751
PIIN_02692	PIIN_04122	G4TC06	G4TFT2	Uncharacterized protein.	Related to cell cycle protein p55cdc.	0.577
PIIN_02692	PIIN_04654	G4TC06	G4THD4	Uncharacterized protein.	Probable FZR protein (Fizzy-related protein).	0.577
PIIN_02692	PIIN_05291	G4TC06	G4TJ59	Uncharacterized protein.	Proteasome subunit beta.	0.921