19 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_10805	Uncharacterized protein. (127 aa)
	PIIN_00751	Uncharacterized protein. (253 aa)
	PIIN_01645	Uncharacterized protein. (739 aa)
	PIIN_02367	Uncharacterized protein. (333 aa)
	PIIN_02501	Uncharacterized protein. (131 aa)
	PIIN_03616	Related to Ribonuclease P protein subunit p30. (325 aa)
	PIIN_04271	Kri1_C domain-containing protein. (690 aa)
	PIIN_05430	DUF676 domain-containing protein. (290 aa)
	PIIN_05431	DUF676 domain-containing protein. (327 aa)
	PIIN_05432	DUF676 domain-containing protein. (372 aa)
	PIIN_05490	Uncharacterized protein. (363 aa)
	PIIN_06095	Related to LipA and NB-ARC domain protein-Aspergillus flavus NRRL3357. (270 aa)
	PIIN_09452	Uncharacterized protein. (248 aa)
	PIIN_10556	DUF676 domain-containing protein. (265 aa)
	PIIN_10557	DUF676 domain-containing protein. (287 aa)
	PIIN_11568	Related to LipA and NB-ARC domain protein-Aspergillus clavatus. (236 aa)
	PIIN_10690	Related to SesB-related regulatory protein, putative-Aspergillus fumigatus. (236 aa)
	PIIN_11417	Uncharacterized protein. (273 aa)
	PIIN_11279	DUF676 domain-containing protein. (286 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00751	PIIN_01645	G4T6E5	G4T912	Uncharacterized protein.	Uncharacterized protein.	0.802
PIIN_00751	PIIN_02501	G4T6E5	G4TBG1	Uncharacterized protein.	Uncharacterized protein.	0.802
PIIN_01645	PIIN_00751	G4T912	G4T6E5	Uncharacterized protein.	Uncharacterized protein.	0.802
PIIN_01645	PIIN_02367	G4T912	G4TB03	Uncharacterized protein.	Uncharacterized protein.	0.929
PIIN_01645	PIIN_02501	G4T912	G4TBG1	Uncharacterized protein.	Uncharacterized protein.	0.996
PIIN_01645	PIIN_03616	G4T912	G4TEC2	Uncharacterized protein.	Related to Ribonuclease P protein subunit p30.	0.998
PIIN_01645	PIIN_04271	G4T912	G4TG86	Uncharacterized protein.	Kri1_C domain-containing protein.	0.929
PIIN_02367	PIIN_01645	G4TB03	G4T912	Uncharacterized protein.	Uncharacterized protein.	0.929
PIIN_02367	PIIN_02501	G4TB03	G4TBG1	Uncharacterized protein.	Uncharacterized protein.	0.878
PIIN_02367	PIIN_03616	G4TB03	G4TEC2	Uncharacterized protein.	Related to Ribonuclease P protein subunit p30.	0.923
PIIN_02501	PIIN_00751	G4TBG1	G4T6E5	Uncharacterized protein.	Uncharacterized protein.	0.802
PIIN_02501	PIIN_01645	G4TBG1	G4T912	Uncharacterized protein.	Uncharacterized protein.	0.996
PIIN_02501	PIIN_02367	G4TBG1	G4TB03	Uncharacterized protein.	Uncharacterized protein.	0.878
PIIN_02501	PIIN_03616	G4TBG1	G4TEC2	Uncharacterized protein.	Related to Ribonuclease P protein subunit p30.	0.997
PIIN_02501	PIIN_04271	G4TBG1	G4TG86	Uncharacterized protein.	Kri1_C domain-containing protein.	0.878
PIIN_03616	PIIN_01645	G4TEC2	G4T912	Related to Ribonuclease P protein subunit p30.	Uncharacterized protein.	0.998
PIIN_03616	PIIN_02367	G4TEC2	G4TB03	Related to Ribonuclease P protein subunit p30.	Uncharacterized protein.	0.923
PIIN_03616	PIIN_02501	G4TEC2	G4TBG1	Related to Ribonuclease P protein subunit p30.	Uncharacterized protein.	0.997
PIIN_03616	PIIN_04271	G4TEC2	G4TG86	Related to Ribonuclease P protein subunit p30.	Kri1_C domain-containing protein.	0.923
PIIN_04271	PIIN_01645	G4TG86	G4T912	Kri1_C domain-containing protein.	Uncharacterized protein.	0.929