28 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_03778	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (428 aa)
	PIIN_06803	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (853 aa)
	PIIN_06810	Uncharacterized protein. (525 aa)
	PIIN_07791	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme. (285 aa)
	PIIN_07953	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily. (895 aa)
	PIIN_07985	Histone H2B; Belongs to the histone H2B family. (147 aa)
	PIIN_08069	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs. (280 aa)
	PIIN_08434	Probable CBF5-Centromere Binding Factor / putative rRNA pseuduridine synthase. (532 aa)
	PIIN_08795	Uncharacterized protein. (686 aa)
	PIIN_08828	Related to CTF18-Chromosome Transmission Fidelity factor. (836 aa)
	PIIN_05582	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (611 aa)
	PIIN_05092	Related to tRNA pseudouridine synthase B. (389 aa)
	PIIN_04913	Uncharacterized protein. (485 aa)
	PIIN_04313	Histone H2B; Belongs to the histone H2B family. (147 aa)
	PIIN_04021	Histone H2B; Belongs to the histone H2B family. (146 aa)
	PIIN_03825	Uncharacterized protein. (377 aa)
	PIIN_03556	3'-5' exonuclease domain-containing protein. (433 aa)
	PIIN_03493	RuvB-like helicase; DNA helicase participates in several chromatin remodeling complexes, including the SWR1 and the INO80 complexes. (468 aa)
	PIF1-2	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (639 aa)
	PIIN_02762	Uncharacterized protein. (136 aa)
	PIIN_01729	Uncharacterized protein. (992 aa)
	PIIN_09161	Telo_bind domain-containing protein. (880 aa)
	PIIN_08877	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (191 aa)
	PIIN_00222	Probable NOP10-nucleolar rRNA processing protein. (61 aa)
	PIIN_00329	POT1PC domain-containing protein. (742 aa)
	PIIN_00467	Uncharacterized protein. (207 aa)
	PIF1	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability. (560 aa)
	PIIN_06323	Related to QDE-3 QDE3 protein (Involved in gene silencing). (627 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIF1	PIIN_00222	G4TC19	G4T5E4	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Probable NOP10-nucleolar rRNA processing protein.	0.583
PIF1	PIIN_00329	G4TC19	G4T5N3	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	POT1PC domain-containing protein.	0.537
PIF1	PIIN_01729	G4TC19	G4U394	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Uncharacterized protein.	0.686
PIF1	PIIN_03556	G4TC19	G4TE87	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	3'-5' exonuclease domain-containing protein.	0.641
PIF1	PIIN_03778	G4TC19	G4TEU8	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.667
PIF1	PIIN_05092	G4TC19	G4TIL3	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Related to tRNA pseudouridine synthase B.	0.586
PIF1	PIIN_05582	G4TC19	G4TK03	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.690
PIF1	PIIN_06323	G4TC19	G4TM47	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Related to QDE-3 QDE3 protein (Involved in gene silencing).	0.667
PIF1	PIIN_06803	G4TC19	G4TNH4	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.795
PIF1	PIIN_06810	G4TC19	G4TNI4	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Uncharacterized protein.	0.641
PIF1	PIIN_07791	G4TC19	G4TR94	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Telomerase reverse transcriptase; Telomerase is a ribonucleoprotein enzyme essential for the replication of chromosome termini in most eukaryotes. It elongates telomeres. It is a reverse transcriptase that adds simple sequence repeats to chromosome ends by copying a template sequence within the RNA component of the enzyme.	0.645
PIF1	PIIN_07953	G4TC19	G4TRQ6	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	ATP-dependent DNA helicase; Belongs to the helicase family. RecQ subfamily.	0.630
PIF1	PIIN_08069	G4TC19	G4TS22	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.	0.591
PIF1	PIIN_08434	G4TC19	G4TT38	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Probable CBF5-Centromere Binding Factor / putative rRNA pseuduridine synthase.	0.615
PIF1	PIIN_08877	G4TC19	G4TUB4	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family.	0.608
PIF1	PIIN_09161	G4TC19	G4TV34	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Telo_bind domain-containing protein.	0.537
PIF1-2	PIIN_00222	G4TCR9	G4T5E4	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Probable NOP10-nucleolar rRNA processing protein.	0.583
PIF1-2	PIIN_00329	G4TCR9	G4T5N3	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	POT1PC domain-containing protein.	0.537
PIF1-2	PIIN_01729	G4TCR9	G4U394	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	Uncharacterized protein.	0.686
PIF1-2	PIIN_03556	G4TCR9	G4TE87	ATP-dependent DNA helicase PIF1; DNA-dependent ATPase and 5'-3' DNA helicase required for the maintenance of both mitochondrial and nuclear genome stability.	3'-5' exonuclease domain-containing protein.	0.641