(47 nodes) Translesion synthesis by POLK network (Serendipita indica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_09793	Integrase catalytic domain-containing protein. (1315 aa)
	PIIN_09621	Integrase catalytic domain-containing protein. (804 aa)
	PIIN_09311	Integrase catalytic domain-containing protein. (728 aa)
	PIIN_09278	Integrase catalytic domain-containing protein. (1027 aa)
	PIIN_08760	Reverse transcriptase domain-containing protein. (1142 aa)
	PIIN_08759	Retrotrans_gag domain-containing protein. (798 aa)
	PIIN_08112	Integrase catalytic domain-containing protein. (655 aa)
	PIIN_08046	Integrase catalytic domain-containing protein. (1227 aa)
	PIIN_07656	Integrase catalytic domain-containing protein. (1557 aa)
	PIIN_07498	Integrase catalytic domain-containing protein. (1391 aa)
	PIIN_06447	Uncharacterized protein. (504 aa)
	PIIN_05582	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism. (611 aa)
	PIIN_05491	Probable UDP-galactopyranose mutase. (507 aa)
	PIIN_05449	Reverse transcriptase Ty1/copia-type domain-containing protein. (333 aa)
	PIIN_05445	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family. (1112 aa)
	PIIN_05349	Zds_C domain-containing protein. (1174 aa)
	PIIN_05020	CIA30 domain-containing protein. (200 aa)
	PIIN_04702	Related to TY3B-TY3B protein. (2540 aa)
	PIIN_04681	Probable ubiquitin/ribosomal protein S27a fusion protein. (158 aa)
	PIIN_04265	Related to UBI4-Ubiquitin. (222 aa)
	PIIN_03897	Uncharacterized protein. (886 aa)
	PIIN_03896	Uncharacterized protein. (109 aa)
	PIIN_03333	Related to UBI4-Ubiquitin. (195 aa)
	PIIN_01770	Integrase catalytic domain-containing protein. (871 aa)
	PIIN_01515	Uncharacterized protein. (75 aa)
	PIIN_01182	Uncharacterized protein. (644 aa)
	PIIN_00835	Uncharacterized protein. (230 aa)
	PIIN_10750	Reverse transcriptase Ty1/copia-type domain-containing protein. (331 aa)
	PIIN_00026	Related to DNA polymerase kappa. (664 aa)
	PIIN_10854	Integrase catalytic domain-containing protein. (155 aa)
	PIIN_10866	Integrase catalytic domain-containing protein. (481 aa)
	PIIN_11126	Reverse transcriptase Ty1/copia-type domain-containing protein. (319 aa)
	PIIN_11903	Reverse transcriptase Ty1/copia-type domain-containing protein. (128 aa)
	PIIN_11293	Uncharacterized protein. (126 aa)
	PIIN_11376	Reverse transcriptase Ty1/copia-type domain-containing protein. (285 aa)
	PIIN_11537	Uncharacterized protein. (142 aa)
	PIIN_01729	Uncharacterized protein. (992 aa)
	PIIN_09876	Reverse transcriptase Ty1/copia-type domain-containing protein. (388 aa)
	PIIN_09989	Integrase catalytic domain-containing protein. (1127 aa)
	PIIN_10035	Uncharacterized protein. (125 aa)
	PIIN_10064	Related to TY3B-TY3B protein. (666 aa)
	PIIN_10076	Related to TY3B-TY3B protein. (513 aa)
	PIIN_10077	Related to TY3B-TY3B protein. (814 aa)
	PIIN_10301	Uncharacterized protein. (379 aa)
	PIIN_10412	Integrase catalytic domain-containing protein. (804 aa)
	PIIN_10422	Uncharacterized protein. (265 aa)
	PIIN_10542	Integrase catalytic domain-containing protein. (290 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PIIN_00026	PIIN_01729	G4T4U4	G4U394	Related to DNA polymerase kappa.	Uncharacterized protein.	0.667
PIIN_00026	PIIN_03333	G4T4U4	G4TDP0	Related to DNA polymerase kappa.	Related to UBI4-Ubiquitin.	0.755
PIIN_00026	PIIN_03897	G4T4U4	G4TF76	Related to DNA polymerase kappa.	Uncharacterized protein.	0.668
PIIN_00026	PIIN_04265	G4T4U4	G4TG81	Related to DNA polymerase kappa.	Related to UBI4-Ubiquitin.	0.755
PIIN_00026	PIIN_04681	G4T4U4	G4THG3	Related to DNA polymerase kappa.	Probable ubiquitin/ribosomal protein S27a fusion protein.	0.755
PIIN_00026	PIIN_05020	G4T4U4	G4TIF0	Related to DNA polymerase kappa.	CIA30 domain-containing protein.	0.755
PIIN_00026	PIIN_05445	G4T4U4	G4TJJ5	Related to DNA polymerase kappa.	DNA repair protein REV1; Deoxycytidyl transferase involved in DNA repair. Transfers a dCMP residue from dCTP to the 3'-end of a DNA primer in a template- dependent reaction. May assist in the first step in the bypass of abasic lesions by the insertion of a nucleotide opposite the lesion. Required for normal induction of mutations by physical and chemical agents; Belongs to the DNA polymerase type-Y family.	0.983
PIIN_00026	PIIN_05582	G4T4U4	G4TK03	Related to DNA polymerase kappa.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.667
PIIN_00835	PIIN_01729	G4T6T1	G4U394	Uncharacterized protein.	Uncharacterized protein.	0.470
PIIN_00835	PIIN_05582	G4T6T1	G4TK03	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.470
PIIN_01182	PIIN_01729	G4T7R0	G4U394	Uncharacterized protein.	Uncharacterized protein.	0.470
PIIN_01182	PIIN_05582	G4T7R0	G4TK03	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.597
PIIN_01515	PIIN_01729	G4T8N6	G4U394	Uncharacterized protein.	Uncharacterized protein.	0.470
PIIN_01515	PIIN_05582	G4T8N6	G4TK03	Uncharacterized protein.	Replication protein A subunit; As part of the replication protein A (RPA/RP-A), a single- stranded DNA-binding heterotrimeric complex, may play an essential role in DNA replication, recombination and repair. Binds and stabilizes single-stranded DNA intermediates, preventing complementary DNA reannealing and recruiting different proteins involved in DNA metabolism.	0.597
PIIN_01729	PIIN_00026	G4U394	G4T4U4	Uncharacterized protein.	Related to DNA polymerase kappa.	0.667
PIIN_01729	PIIN_00835	G4U394	G4T6T1	Uncharacterized protein.	Uncharacterized protein.	0.470
PIIN_01729	PIIN_01182	G4U394	G4T7R0	Uncharacterized protein.	Uncharacterized protein.	0.470
PIIN_01729	PIIN_01515	G4U394	G4T8N6	Uncharacterized protein.	Uncharacterized protein.	0.470
PIIN_01729	PIIN_01770	G4U394	G4T9D2	Uncharacterized protein.	Integrase catalytic domain-containing protein.	0.470
PIIN_01729	PIIN_03333	G4U394	G4TDP0	Uncharacterized protein.	Related to UBI4-Ubiquitin.	0.610