155 items (Serendipita indica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PIIN_03557	Related to RRP9-protein associated with the U3 small nucleolar RNA. (560 aa)
	PIIN_00093	Uncharacterized protein. (618 aa)
	PIIN_00010	Probable IMP4-component of the U3 small nucleolar ribonucleoprotein. (288 aa)
	PIIN_00160	BP28CT domain-containing protein. (1961 aa)
	PIIN_00213	RRM domain-containing protein. (328 aa)
	PIIN_00287	Related to ATP-dependent helicase involved in rRNA processing; Belongs to the DEAD box helicase family. (571 aa)
	PIIN_00293	RIX1 domain-containing protein. (719 aa)
	PIIN_00342	Probable exosome complex exonuclease rrp41. (277 aa)
	PIIN_00388	Probable RPL43B-60S large subunit ribosomal protein. (92 aa)
	PIIN_00452	Probable ribosomal protein S12, cytosolic; Belongs to the universal ribosomal protein uS19 family. (154 aa)
	PIIN_00635	Exonuclease domain-containing protein. (301 aa)
	PIIN_00780	Uncharacterized protein. (69 aa)
	PIIN_00736	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA. (365 aa)
	PIIN_00779	Related to PITSLRE protein kinase isoforms. (375 aa)
	PIIN_00958	Ribosomal_L28e domain-containing protein. (94 aa)
	RPS1	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (256 aa)
	PIIN_01163	Related to NOC4-ribosome biogenesis protein. (564 aa)
	PIIN_01213	U3 small nucleolar RNA-associated protein 22. (1221 aa)
	PIIN_01299	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family. (627 aa)
	PIIN_01290	CLP1_P domain-containing protein. (681 aa)
	PIIN_11757	Uncharacterized protein. (205 aa)
	PIIN_01336	Probable NOP1-fibrillarin. (309 aa)
	TSR3	Ribosome biogenesis protein TSR3; Ribosome biogenesis protein required for processing 35S pre- rRNA at site D; Belongs to the TSR3 family. (281 aa)
	PIIN_01509	Ipi1_N domain-containing protein. (721 aa)
	PIIN_01635	Related to LAS1-Protein involved in cell morphogenesis, cytoskeletal regulation and bud formation. (256 aa)
	PIIN_01644	Related to protease ULP2 protein. (825 aa)
	PIIN_01654	Related to SAS10-involved in silencing. (677 aa)
	PIIN_01674	Related to CSL4-exosome core component. (211 aa)
	PIIN_01695	60S ribosome subunit biogenesis protein NIP7; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	PIIN_01711	Related to RRP4-3`-5` exoribonuclease. (311 aa)
	PIIN_01771	Probable 40S ribosomal protein S9; Belongs to the universal ribosomal protein uS4 family. (192 aa)
	PIIN_01838	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (196 aa)
	PIIN_02164	Probable pectate lyase. (239 aa)
	PIIN_02173	Related to REX4-strong similarity to X.laevis XPMC2 protein. (397 aa)
	PIIN_02255	Ribonucloprotein; Common component of the spliceosome and rRNA processing machinery; Belongs to the eukaryotic ribosomal protein eL8 family. (126 aa)
	PIIN_02388	Probable RPS18A-ribosomal protein S18.e.c4; Belongs to the universal ribosomal protein uS13 family. (157 aa)
	PIIN_02358	Related to EMG1-Protein required for ribosome biogenesis. (348 aa)
	PIIN_02398	Related to RRP5-processing of pre-ribosomal RNA. (1501 aa)
	PIIN_02428	Probable 40S ribosomal protein S16; Belongs to the universal ribosomal protein uS9 family. (143 aa)
	PIIN_02501	Uncharacterized protein. (131 aa)
	PIIN_02502	Probable ribosomal protein S28; Belongs to the universal ribosomal protein uS12 family. (145 aa)
	PIIN_02602	Related to LTV1-low-temperature viability protein. (533 aa)
	PIIN_02603	Uncharacterized protein. (291 aa)
	PIIN_02609	Uncharacterized protein. (372 aa)
	PIIN_02612	Related to WD-repeat protein crb3. (477 aa)
	PIIN_02675	WD_REPEATS_REGION domain-containing protein. (591 aa)
	PIIN_02693	40S ribosomal protein S27. (83 aa)
	PIIN_02695	Uncharacterized protein. (128 aa)
	PIIN_02714	Probable PNO1 protein. (317 aa)
	PIIN_02757	Uncharacterized protein. (182 aa)
	PIIN_02785	RNase_PH domain-containing protein. (333 aa)
	PIIN_03011	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family. (136 aa)
	PIIN_03192	Probable ROK1-ATP-dependent RNA helicase; Belongs to the DEAD box helicase family. (561 aa)
	PIIN_03199	Related to Sentrin-specific protease 1. (555 aa)
	PIIN_03388	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (129 aa)
	ERB1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome. (757 aa)
	PIIN_03472	Related to MRPS8-mitochondrial ribosomal protein, small subunit. (155 aa)
	PIIN_03498	Uncharacterized protein. (745 aa)
	PIIN_03503	Uncharacterized protein. (373 aa)
	PIIN_03616	Related to Ribonuclease P protein subunit p30. (325 aa)
	PIIN_03596	Related to S. pombe beta-transducin. (955 aa)
	PIIN_03638	Probable 40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (258 aa)
	PIIN_03698	Probable RRP45-Exosome complex exonuclease. (313 aa)
	PIIN_11851	Probable BUD23-Protein involved in bud-site selection. (283 aa)
	PIIN_03751	Uncharacterized protein. (967 aa)
	PIIN_03840	Probable ribosomal protein S28B. (70 aa)
	PIIN_03858	Probable ribosomal protein L34.e. (113 aa)
	NAT10	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation. (1111 aa)
	PIIN_04008	Related to UTP6-U3 snoRNP protein. (654 aa)
	PIIN_04023	Probable ribosomal protein S4.e, cytosolic. (74 aa)
	PIIN_04072	U3 small nucleolar RNA-associated protein 25; DEAD-box RNA helicase-like protein required for pre-18S rRNA processing, specifically at sites A0, A1, and A2. (623 aa)
	PIIN_04186	20S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (439 aa)
	PIIN_04246	Related to microtubule binding protein YTM1-Laccaria bicolor. (215 aa)
	PIIN_04268	Probable RPS19B-ribosomal protein S19.e, cytosolic. (157 aa)
	PIIN_04383	Probable 40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (204 aa)
	RPS0	40S ribosomal protein S0; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (280 aa)
	PIIN_04537	Related to DIP2-Dom34p-interacting protein. (912 aa)
	PIIN_04564	Uncharacterized protein. (212 aa)
	PIIN_04590	Probable MTR4-involved in nucleocytoplasmic transport of mRNA. (1010 aa)
	PIIN_04754	Related to ECM16-putative DEAH-box RNA helicase. (1200 aa)
	PIIN_04759	Related to EBP2-required for pre-rRNA processing and ribosomal subunit assembly. (390 aa)
	PIIN_04860	Uncharacterized protein. (463 aa)
	PIIN_04875	Related to Exosome complex exonuclease RRP43. (279 aa)
	PIIN_05172	Uncharacterized protein. (648 aa)
	PIIN_05178	Related to ENP1-required for pre-rRNA processing and 40S ribosomal subunit synthesis. (463 aa)
	PIIN_05179	Uncharacterized protein. (803 aa)
	PIIN_05180	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly. (350 aa)
	PIIN_05181	Probable NOP58-required for pre-18S rRNA processing. (587 aa)
	PIIN_05229	Uncharacterized protein. (1175 aa)
	PIIN_05498	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (147 aa)
	PIIN_05653	Probable periodic tryptophan protein PWP2. (909 aa)
	PIIN_05939	Related to UTP4-U3 snoRNP protein. (806 aa)
	PIIN_06083	Related to RCL1-RNA terminal phosphate cyclase-like protein. (355 aa)
	PIIN_06110	Uncharacterized protein. (453 aa)
	PIIN_06111	DRIM domain-containing protein. (2573 aa)
	PIIN_06139	Probable 40S ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family. (268 aa)
	PIIN_06228	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (133 aa)
	SPB1	AdoMet-dependent rRNA methyltransferase SPB1; Required for proper assembly of pre-ribosomal particles during the biogenesis of the 60S ribosomal subunit; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. SPB1 subfamily. (1111 aa)
	PIIN_06363	40S ribosomal protein S4; Belongs to the eukaryotic ribosomal protein eS4 family. (262 aa)
	PIIN_06534	Related to exonuclease, RNase T and DNA polymerase III-Flavobacterium johnsoniae. (221 aa)
	PIIN_06695	annotation not available (196 aa)
	PIIN_06696	Uncharacterized protein. (384 aa)
	PIIN_06698	Uncharacterized protein. (377 aa)
	PIIN_06977	Probable pectate lyase. (244 aa)
	PIIN_06978	Probable pectate lyase. (244 aa)
	PIIN_06986	Related to ribosomal protein S4, mitochondrial. (193 aa)
	PIIN_07036	RNase_PH domain-containing protein. (267 aa)
	PIIN_07060	Related to SOF1-involved in 18S pre-rRNA production. (475 aa)
	PIIN_07120	Related to ribosomal protein S13; Belongs to the universal ribosomal protein uS13 family. (188 aa)
	PIIN_07272	Probable BMS1-GTP-binding protein, required for distinct steps of 40S ribosome biogenesis. (901 aa)
	PIIN_07288	Probable casein kinase-1 hhp1; Belongs to the protein kinase superfamily. (409 aa)
	PIIN_07362	Probable DEAD box protein (Putative RNA helicase); Belongs to the DEAD box helicase family. (458 aa)
	PIIN_07393	Related to NUG1-Nuclear GTPase (Involved in Ribosome biogenesis). (548 aa)
	PIIN_07493	Probable RPS11B-ribosomal protein S11B; Belongs to the universal ribosomal protein uS17 family. (154 aa)
	PIIN_07486	RNase_PH domain-containing protein. (244 aa)
	PIIN_07583	Related to UTP13-U3 snoRNP protein. (837 aa)
	PIIN_07761	Probable IMP3-component of the U3 small nucleolar ribonucleoprotein. (182 aa)
	PIIN_07907	Related to Pwp2p. (524 aa)
	PIIN_07963	Probable 40s ribosomal protein s20. (124 aa)
	PIIN_08100	Related to RRP1-involved in processing rRNA species to mature rRNAs. (263 aa)
	PIIN_08145	Probable SIK1-involved in pre-rRNA processing. (526 aa)
	PIIN_08416	Related to UTP7-U3 snoRNP protein. (623 aa)
	PIIN_08452	Uncharacterized protein. (915 aa)
	PIIN_08754	rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family. (330 aa)
	PIIN_08860	Probable 40s ribosomal protein S13.e; Belongs to the universal ribosomal protein uS15 family. (166 aa)
	PIIN_08861	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (238 aa)
	PIIN_09052	Related to UTP18-Possible U3 snoRNP protein involved in maturation of pre-18S rRNA. (542 aa)
	PIIN_09138	Uncharacterized protein. (478 aa)
	PIIN_09141	Uncharacterized protein. (494 aa)
	PIIN_09229	Related to nucleolar 100K polymyositis-scleroderma protein. (847 aa)
	PIIN_09249	Probable RPL2A-ribosomal protein L8.e. (254 aa)
	PIIN_09309	Probable ribosomal protein L18, cytosolic. (184 aa)
	PIIN_09443	Related to TSR1-protein involved in 20S rRNA accumulation. (673 aa)
	PIIN_09533	Related to RRP40-protein involved in ribosomal RNA processing, component of the exosome complex. (230 aa)
	PIIN_09555	Probable 40S Ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (92 aa)
	PIIN_09618	Related to NOP14-nuclear and nucleolar protein with possible role in ribosome biogenesis. (221 aa)
	PIIN_09799	Related to RIO Kinase 1. (678 aa)
	PIIN_09880	WD_REPEATS_REGION domain-containing protein. (240 aa)
	PIIN_09901	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (133 aa)
	PIIN_09905	Related to cgi-94 protein. (319 aa)
	PIIN_11802	Related to pescadillo development protein. (452 aa)
	PIIN_10226	Related to Nucleolar protein NOP4. (850 aa)
	PIIN_10320	Related to NOP14-nuclear and nucleolar protein with possible role in ribosome biogenesis. (684 aa)
	PIIN_10388	Probable 40S ribosomal protein S10. (153 aa)
	PIIN_10442	Related to CRP-2 40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (151 aa)
	PIIN_10578	WD_REPEATS_REGION domain-containing protein. (158 aa)
	PIIN_10771	Sof1 domain-containing protein. (61 aa)
	PIIN_10793	Related to TSR1-protein involved in 20S rRNA accumulation. (372 aa)
	PIIN_11110	Probable RPS8A-ribosomal protein S8.e. (121 aa)
	PIIN_11111	Related to TSR1-protein involved in 20S rRNA accumulation. (157 aa)
	PIIN_11501	Related to MPP10-component of the U3 small nucleolar ribonucleoprotein. (202 aa)
	PIIN_03435	Probable RPS17B-ribosomal protein S17.e.B. (145 aa)
	PIIN_03436	Probable RPS22A-ribosomal protein S15a.e.c10, cytosolic; Belongs to the universal ribosomal protein uS8 family. (130 aa)
	PIIN_09844	Related to RIO2 protein. (460 aa)
	PIIN_00515	Uncharacterized protein. (91 aa)

Your Current Organism:

Serendipita indica

NCBI taxonomy Id: 1109443
Other names: Piriformospora indica DSM 11827, S. indica DSM 11827, Serendipita indica DSM 11827

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ERB1	NAT10	G4TDW0	G4TFH1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RNA cytidine acetyltransferase; RNA cytidine acetyltransferase with specificity toward both 18S rRNA and tRNAs. Catalyzes the formation of N(4)-acetylcytidine (ac4C) in 18S rRNA. Required for early nucleolar cleavages of precursor rRNA at sites A0, A1 and A2 during 18S rRNA synthesis. Catalyzes the formation of ac4C in serine and leucine tRNAs. Requires the tRNA- binding adapter protein TAN1 for full tRNA acetyltransferase activity but not for 18S rRNA acetylation.	0.911
ERB1	PIIN_00010	G4TDW0	G4T500	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable IMP4-component of the U3 small nucleolar ribonucleoprotein.	0.825
ERB1	PIIN_00093	G4TDW0	G4T4Y2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Uncharacterized protein.	0.545
ERB1	PIIN_00160	G4TDW0	G4T5A5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	BP28CT domain-containing protein.	0.923
ERB1	PIIN_00213	G4TDW0	G4T5D6	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RRM domain-containing protein.	0.536
ERB1	PIIN_00287	G4TDW0	G4T5M2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to ATP-dependent helicase involved in rRNA processing; Belongs to the DEAD box helicase family.	0.898
ERB1	PIIN_00293	G4TDW0	G4T5M7	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	RIX1 domain-containing protein.	0.936
ERB1	PIIN_00388	G4TDW0	G4T5W5	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable RPL43B-60S large subunit ribosomal protein.	0.545
ERB1	PIIN_00736	G4TDW0	G4T6H8	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to LCP5-U3 small nucleolar ribonucleoprotein involved in maturation of 18S rRNA.	0.563
ERB1	PIIN_00779	G4TDW0	G4T6K2	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to PITSLRE protein kinase isoforms.	0.411
ERB1	PIIN_00958	G4TDW0	G4T791	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ribosomal_L28e domain-containing protein.	0.582
ERB1	PIIN_01163	G4TDW0	G4T7M4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to NOC4-ribosome biogenesis protein.	0.844
ERB1	PIIN_01213	G4TDW0	G4T7W1	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar RNA-associated protein 22.	0.852
ERB1	PIIN_01290	G4TDW0	G4T834	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	CLP1_P domain-containing protein.	0.814
ERB1	PIIN_01299	G4TDW0	G4T809	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	U3 small nucleolar ribonucleoprotein protein MPP10; Involved in nucleolar processing of pre-18S ribosomal RNA. Belongs to the MPP10 family.	0.530
ERB1	PIIN_01336	G4TDW0	G4T888	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Probable NOP1-fibrillarin.	0.927
ERB1	PIIN_01509	G4TDW0	G4T8T4	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Ipi1_N domain-containing protein.	0.811
ERB1	PIIN_01635	G4TDW0	G4T928	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to LAS1-Protein involved in cell morphogenesis, cytoskeletal regulation and bud formation.	0.808
ERB1	PIIN_01644	G4TDW0	G4T935	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to protease ULP2 protein.	0.717
ERB1	PIIN_01654	G4TDW0	G4T941	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	Related to SAS10-involved in silencing.	0.781