STRINGSTRING
HR09_09415 HR09_09415 dnaG dnaG rplS rplS HR09_09345 HR09_09345 HR09_09295 HR09_09295 cobB cobB HR09_09200 HR09_09200 serC serC HR09_09110 HR09_09110 HR09_09045 HR09_09045 ackA ackA HR09_08970 HR09_08970 HR09_08965 HR09_08965 kat kat HR09_08830 HR09_08830 tadA tadA rnz rnz HR09_08705 HR09_08705 lipB lipB HR09_08645 HR09_08645 HR09_08570 HR09_08570 HR09_08565 HR09_08565 rpsP rpsP cutC cutC HR09_08280 HR09_08280 HR09_08185 HR09_08185 HR09_08180 HR09_08180 HR09_08170 HR09_08170 truA truA HR09_08060 HR09_08060 HR09_08010 HR09_08010 HR09_07945 HR09_07945 HR09_07940 HR09_07940 HR09_07920 HR09_07920 HR09_07865 HR09_07865 HR09_07820 HR09_07820 HR09_07810 HR09_07810 HR09_07805 HR09_07805 HR09_07755 HR09_07755 HR09_07740 HR09_07740 ispE ispE HR09_07630 HR09_07630 HR09_07505 HR09_07505 HR09_07480 HR09_07480 HR09_07450 HR09_07450 HR09_07370 HR09_07370 HR09_07310 HR09_07310 HR09_07255 HR09_07255 HR09_07245 HR09_07245 HR09_07230 HR09_07230 HR09_07215 HR09_07215 HR09_07085 HR09_07085 HR09_06940 HR09_06940 HR09_06920 HR09_06920 HR09_06740 HR09_06740 HR09_06670 HR09_06670 HR09_06665 HR09_06665 HR09_06645 HR09_06645 HR09_06640 HR09_06640 fhs fhs HR09_06540 HR09_06540 HR09_06535 HR09_06535 HR09_06490 HR09_06490 HR09_06305 HR09_06305 HR09_06290 HR09_06290 rpsO rpsO HR09_00230 HR09_00230 HR09_00270 HR09_00270 HR09_00275 HR09_00275 HR09_00390 HR09_00390 HR09_00400 HR09_00400 HR09_00425 HR09_00425 ychF ychF HR09_00615 HR09_00615 HR09_00725 HR09_00725 HR09_00845 HR09_00845 rplQ rplQ rpsD rpsD rpsK rpsK rpsM rpsM rpmJ rpmJ rplO rplO rpmD rpmD HR09_00095 HR09_00095 rpsE rpsE rplR rplR rplF rplF rpsH rpsH rpsN rpsN rplE rplE rplN rplN rpsQ rpsQ rpmC rpmC rplP rplP rpsC rpsC rplV rplV rpsS rpsS rplB rplB rplW rplW rplD rplD rplC rplC rpsJ rpsJ rpsG rpsG rpsL rpsL HR09_01075 HR09_01075 HR09_01115 HR09_01115 HR09_01120 HR09_01120 rpmG rpmG rpmB rpmB HR09_01145 HR09_01145 cas1-2 cas1-2 dtd dtd recO recO HR09_01530 HR09_01530 HR09_01565 HR09_01565 HR09_01625 HR09_01625 HR09_01695 HR09_01695 HR09_01790 HR09_01790 HR09_01805 HR09_01805 HR09_01845 HR09_01845 HR09_01875 HR09_01875 HR09_01935 HR09_01935 HR09_02010 HR09_02010 HR09_02040 HR09_02040 priA priA nadD nadD HR09_02375 HR09_02375 HR09_02500 HR09_02500 ybeY ybeY HR09_02590 HR09_02590 HR09_02685 HR09_02685 HR09_02965 HR09_02965 lysA lysA HR09_03075 HR09_03075 HR09_03100 HR09_03100 HR09_03110 HR09_03110 HR09_03245 HR09_03245 HR09_03370 HR09_03370 HR09_03855 HR09_03855 HR09_03935 HR09_03935 HR09_03940 HR09_03940 HR09_03950 HR09_03950 HR09_03965 HR09_03965 HR09_03985 HR09_03985 HR09_04000 HR09_04000 HR09_04065 HR09_04065 HR09_04260 HR09_04260 HR09_04285 HR09_04285 HR09_04325 HR09_04325 HR09_04340 HR09_04340 HR09_04370 HR09_04370 HR09_04405 HR09_04405 recR recR HR09_04560 HR09_04560 purD purD HR09_04590 HR09_04590 HR09_04630 HR09_04630 HR09_04640 HR09_04640 HR09_04680 HR09_04680 rpmE2 rpmE2 rpsF rpsF rpsR rpsR HR09_04940 HR09_04940 HR09_04945 HR09_04945 HR09_04950 HR09_04950 HR09_04975 HR09_04975 HR09_04985 HR09_04985 HR09_05030 HR09_05030 rpmH rpmH HR09_05115 HR09_05115 rpmI rpmI rplT rplT rpsT rpsT HR09_05260 HR09_05260 HR09_05280 HR09_05280 HR09_05360 HR09_05360 sufC sufC HR09_05370 HR09_05370 HR09_05475 HR09_05475 HR09_05550 HR09_05550 rplL rplL HR09_05580 HR09_05580 rplA rplA rplK rplK rpsU rpsU rpsB rpsB rpsI rpsI rplM rplM HR09_05900 HR09_05900 HR09_05905 HR09_05905 HR09_05925 HR09_05925 HR09_05935 HR09_05935 rplU rplU HR09_06045 HR09_06045 HR09_06150 HR09_06150 HR09_06160 HR09_06160 nth nth HR09_11055 HR09_11055 HR09_11025 HR09_11025 HR09_11005 HR09_11005 HR09_10965 HR09_10965 HR09_10945 HR09_10945 HR09_10570 HR09_10570 HR09_10475 HR09_10475 adk adk HR09_10360 HR09_10360 HR09_10285 HR09_10285 HR09_10200 HR09_10200 HR09_10045 HR09_10045 hemH hemH HR09_10000 HR09_10000 HR09_09970 HR09_09970 HR09_09935 HR09_09935 HR09_09895 HR09_09895 HR09_09880 HR09_09880 HR09_09870 HR09_09870 HR09_09825 HR09_09825 rplY rplY bioB bioB HR09_09770 HR09_09770 HR09_09750 HR09_09750 HR09_09665 HR09_09665 HR09_09625 HR09_09625 HR09_09595 HR09_09595 HR09_09500 HR09_09500 HR09_09490 HR09_09490 udk udk dnaJ dnaJ
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
HR09_09415Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (229 aa)
dnaGDNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (673 aa)
rplS50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (121 aa)
HR09_09345Metallo-beta-lactamase; Derived by automated computational analysis using gene prediction method: Protein Homology. (269 aa)
HR09_09295Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (384 aa)
cobBNAD-dependent protein deacylase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the sirtuin family. Class III subfamily. (234 aa)
HR09_092002-hydroxyhepta-2,4-diene-1,7-dioate isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (219 aa)
serCMFS transporter; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (360 aa)
HR09_09110Branched-chain amino acid aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
HR09_09045Phosphatidylserine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the CDP-alcohol phosphatidyltransferase class-I family. (236 aa)
ackAAcetate kinase; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (399 aa)
HR09_08970Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
HR09_08965ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (435 aa)
katCatalase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the catalase family. (485 aa)
HR09_08830Sodium:proton exchanger; Derived by automated computational analysis using gene prediction method: Protein Homology. (317 aa)
tadACMP deaminase; Catalyzes the deamination of adenosine to inosine at the wobble position 34 of tRNA(Arg2); Belongs to the cytidine and deoxycytidylate deaminase family. (150 aa)
rnzRibonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family. (304 aa)
HR09_08705DNA helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (528 aa)
lipBHydrolase; Catalyzes the transfer of endogenously produced octanoic acid from octanoyl-acyl-carrier-protein onto the lipoyl domains of lipoate- dependent enzymes. Lipoyl-ACP can also act as a substrate although octanoyl-ACP is likely to be the physiological substrate. (492 aa)
HR09_08645SWIM zinc finger domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (459 aa)
HR09_08570Virulence-associated protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (396 aa)
HR09_08565Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (325 aa)
rpsP30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS16 family. (192 aa)
cutCCopper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family. (248 aa)
HR09_08280Molecular chaperone DnaK; Derived by automated computational analysis using gene prediction method: Protein Homology. (126 aa)
HR09_08185Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
HR09_08180acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (573 aa)
HR09_08170ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (709 aa)
truAPseudouridine synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs. (252 aa)
HR09_08060Histidinol phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
HR09_08010Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
HR09_07945Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (337 aa)
HR09_07940Acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)
HR09_07920Peptidase M24; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)
HR09_078653-aminobutyryl-CoA ammonia lyase; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
HR09_07820acyl-CoA dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
HR09_07810Electron transfer flavoprotein subunit alpha; Derived by automated computational analysis using gene prediction method: Protein Homology. (335 aa)
HR09_07805enoyl-CoA hydratase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the enoyl-CoA hydratase/isomerase family. (256 aa)
HR09_07755Riboflavin biosynthesis protein RibF; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ribF family. (318 aa)
HR09_07740PPR repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (579 aa)
ispE4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (274 aa)
HR09_07630DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
HR09_07505Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (243 aa)
HR09_07480cob(I)yrinic acid a c-diamide adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Cob(I)alamin adenosyltransferase family. (187 aa)
HR09_07450Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (494 aa)
HR09_07370Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
HR09_07310ATP:cob(I)alamin adenosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the Cob(I)alamin adenosyltransferase family. (188 aa)
HR09_072556-pyruvoyl tetrahydrobiopterin synthase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
HR09_07245Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (139 aa)
HR09_07230Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0758 family. (230 aa)
HR09_07215Phosphoesterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (344 aa)
HR09_07085Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (196 aa)
HR09_06940Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
HR09_06920Peptidase M20; Derived by automated computational analysis using gene prediction method: Protein Homology. (451 aa)
HR09_06740Peptidase C69; Derived by automated computational analysis using gene prediction method: Protein Homology. (552 aa)
HR09_06670Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (460 aa)
HR09_06665Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
HR09_06645Recombination protein RecF; Derived by automated computational analysis using gene prediction method: Protein Homology. (636 aa)
HR09_06640Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (968 aa)
fhsFormate--tetrahydrofolate ligase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the formate--tetrahydrofolate ligase family. (555 aa)
HR09_06540acetyl-CoA hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
HR09_06535Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (807 aa)
HR09_06490Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (565 aa)
HR09_06305Amidophosphoribosyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (627 aa)
HR09_06290Alpha-1,3/4-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (607 aa)
rpsO30S ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
HR09_00230NAD-dependent dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
HR09_00270Virulence-associated protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (395 aa)
HR09_00275Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (311 aa)
HR09_00390Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (312 aa)
HR09_00400ATP synthase subunit B; Produces ATP from ADP in the presence of a proton gradient across the membrane; the B subunit is part of the catalytic core of the ATP synthase complex; Derived by automated computational analysis using gene prediction method: Protein Homology. (439 aa)
HR09_00425Long-chain fatty acid--CoA ligase; Derived by automated computational analysis using gene prediction method: Protein Homology. (556 aa)
ychFGTP-binding protein; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner. (367 aa)
HR09_00615alpha-L-fucosidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)
HR09_00725Peptidase M48 family protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (265 aa)
HR09_00845UDP-N-acetylglucosamine acyltransferase; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. (263 aa)
rplQ50S ribosomal protein L17; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
rpsD30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. (201 aa)
rpsK30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (128 aa)
rpsM30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. (126 aa)
rpmJ50S ribosomal protein L36; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL36 family. (38 aa)
rplO50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (148 aa)
rpmD50S ribosomal protein L30; Derived by automated computational analysis using gene prediction method: Protein Homology. (58 aa)
HR09_00095Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (158 aa)
rpsE30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (172 aa)
rplR50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (114 aa)
rplF50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. (183 aa)
rpsH30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (131 aa)
rpsN30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. (89 aa)
rplE50S ribosomal protein L5; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (186 aa)
rplN50S ribosomal protein L14; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family. (121 aa)
rpsQ30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (84 aa)
rpmC50S ribosomal protein L29; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uL29 family. (64 aa)
rplP50S ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family. (144 aa)
rpsC30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (246 aa)
rplV50S ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. (134 aa)
rpsS30S ribosomal protein S19; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. (89 aa)
rplB50S ribosomal protein L2; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (274 aa)
rplW50S ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (97 aa)
rplD50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. (209 aa)
rplC50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (205 aa)
rpsJ30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (101 aa)
rpsG30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (158 aa)
rpsL30S ribosomal protein S12; Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit. (134 aa)
HR09_01075Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (1160 aa)
HR09_01115Epimerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
HR09_011204-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
rpmG50S ribosomal protein L33; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL33 family. (62 aa)
rpmB50S ribosomal protein L28; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL28 family. (79 aa)
HR09_01145DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
cas1-2CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (1032 aa)
dtdD-tyrosyl-tRNA(Tyr) deacylase; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (150 aa)
recODNA recombination protein RecO; Involved in DNA repair and RecF pathway recombination. (245 aa)
HR09_01530DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (697 aa)
HR09_01565ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (334 aa)
HR09_01625Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (328 aa)
HR09_01695Beta-hexosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (777 aa)
HR09_01790Aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the peptidase C1 family. (400 aa)
HR09_01805DNA recombination protein RecN; May be involved in recombinational repair of damaged DNA. (551 aa)
HR09_01845CMP deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (149 aa)
HR09_01875Miro-like protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (812 aa)
HR09_01935Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
HR09_02010Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (158 aa)
HR09_02040Dihydropyrimidine dehydrogenase; NADH-dependent; catalyzes the conversion of pyrimidines to 5,6-dihydro compounds in pyrimidine degradation; Derived by automated computational analysis using gene prediction method: Protein Homology. (490 aa)
priAPrimosomal protein N; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (837 aa)
nadDNicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (197 aa)
HR09_02375RNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (97 aa)
HR09_02500Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
ybeYrRNA maturation factor; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. (151 aa)
HR09_02590Inosine-5-monophosphate dehydrogenase; Catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; Derived by automated computational analysis using gene prediction method: Protein Homology. (498 aa)
HR09_02685Cytochrome C biogenesis protein CcmF; Derived by automated computational analysis using gene prediction method: Protein Homology. (307 aa)
HR09_02965DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (88 aa)
lysADiaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine. (382 aa)
HR09_03075NAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (339 aa)
HR09_03100Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. (138 aa)
HR09_03110Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (695 aa)
HR09_03245Histidinol phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (187 aa)
HR09_03370ATPase AAA; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
HR09_03855HIT family hydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
HR09_03935Cytochrome C biogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
HR09_03940Redox-active disulfide protein 2; Derived by automated computational analysis using gene prediction method: Protein Homology. (77 aa)
HR09_03950Arsenic ABC transporter ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (572 aa)
HR09_03965Topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (676 aa)
HR09_03985DNA topoisomerase I; Derived by automated computational analysis using gene prediction method: Protein Homology. (693 aa)
HR09_04000Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (356 aa)
HR09_04065Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
HR09_04260Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
HR09_04285Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
HR09_04325SPFH/Band 7/PHB domain protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (326 aa)
HR09_043402-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (253 aa)
HR09_04370Thiol peroxidase; Derived by automated computational analysis using gene prediction method: Protein Homology. (151 aa)
HR09_04405Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (295 aa)
recRRecombinase RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (207 aa)
HR09_04560DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial histone-like protein family. (92 aa)
purDPhosphoribosylamine--glycine ligase; Catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the GARS family. (431 aa)
HR09_04590Peptidase S9; Derived by automated computational analysis using gene prediction method: Protein Homology. (732 aa)
HR09_04630Signal peptide protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (190 aa)
HR09_04640DNA glycosylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
HR09_04680Phospholipase; Derived by automated computational analysis using gene prediction method: Protein Homology. (263 aa)
rpmE250S ribosomal protein L31; Derived by automated computational analysis using gene prediction method: Protein Homology. (85 aa)
rpsF30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA. (117 aa)
rpsR30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (90 aa)
HR09_04940Peptide-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
HR09_04945Aerotolerance regulator BatD; Derived by automated computational analysis using gene prediction method: Protein Homology. (599 aa)
HR09_04950Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
HR09_04975ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (331 aa)
HR09_04985Nicotinate-nucleotide pyrophosphorylase; Catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the NadC/ModD family. (280 aa)
HR09_05030Cobalt chelatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (1469 aa)
rpmH50S ribosomal protein L34; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL34 family. (50 aa)
HR09_05115Aminoglycoside phosphotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (362 aa)
rpmI50S ribosomal protein L35; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bL35 family. (65 aa)
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. (115 aa)
rpsT30S ribosomal protein S20; Binds directly to 16S ribosomal RNA. (84 aa)
HR09_05260Guanine deaminase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)
HR09_05280Pyruvate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pyruvate kinase family. (473 aa)
HR09_05360ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (447 aa)
sufCCysteine desulfurase; Part of SUF system involved in inserting iron-sulfur clusters into proteins; in Escherichia coli this protein forms a complex with SufBD; the SufBCD complex stimulates the cysteine desulfurase SufS in conjunction with SufE; Derived by automated computational analysis using gene prediction method: Protein Homology. (250 aa)
HR09_05370Cysteine desulfurase; Derived by automated computational analysis using gene prediction method: Protein Homology. (483 aa)
HR09_05475ATP-dependent DNA helicase RecQ; Derived by automated computational analysis using gene prediction method: Protein Homology. (725 aa)
HR09_05550DNA recombination protein RecF; Derived by automated computational analysis using gene prediction method: Protein Homology. (365 aa)
rplL50S ribosomal protein L7/L12; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (125 aa)
HR09_0558050S ribosomal protein L10; Derived by automated computational analysis using gene prediction method: Protein Homology. (174 aa)
rplA50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (232 aa)
rplK50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (145 aa)
rpsU30S ribosomal protein S21; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial ribosomal protein bS21 family. (63 aa)
rpsB30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS2 family. (281 aa)
rpsI30S ribosomal protein S9; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the universal ribosomal protein uS9 family. (128 aa)
rplM50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (151 aa)
HR09_05900Histidinol phosphate phosphatase; Derived by automated computational analysis using gene prediction method: Protein Homology. (172 aa)
HR09_05905Glutamate formiminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (300 aa)
HR09_05925Methenyltetrahydrofolate cyclohydrolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (209 aa)
HR09_05935Cupin; Derived by automated computational analysis using gene prediction method: Protein Homology. (109 aa)
rplU50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (105 aa)
HR09_06045Gliding motility-associated lipoprotein GldK; Derived by automated computational analysis using gene prediction method: Protein Homology. (491 aa)
HR09_06150Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
HR09_06160Pirin; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the pirin family. (239 aa)
nthEndonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (224 aa)
HR09_110554-hydroxybutyrate CoA-transferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (431 aa)
HR09_11025Mobilization protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (316 aa)
HR09_11005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (929 aa)
HR09_10965Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (400 aa)
HR09_10945Histidinol phosphate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
HR09_10570Cysteine methyltransferase; Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction: the enzyme is irreversibly inactivated. (170 aa)
HR09_10475Oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology. (241 aa)
adkAdenylate kinase; Catalyzes the reversible transfer of the terminal phosphate group between ATP and AMP. Plays an important role in cellular energy homeostasis and in adenine nucleotide metabolism; Belongs to the adenylate kinase family. (194 aa)
HR09_10360Amidinotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (309 aa)
HR09_10285Helicase; Derived by automated computational analysis using gene prediction method: Protein Homology. (471 aa)
HR09_102002-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (147 aa)
HR09_100455'-nucleotidase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the 5'-nucleotidase family. (590 aa)
hemHFerrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family. (345 aa)
HR09_10000Lipopolysaccharide kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (324 aa)
HR09_09970Magnesium transporter; Acts as a magnesium transporter. (450 aa)
HR09_09935Chromosome partitioning protein ParB; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the ParB family. (289 aa)
HR09_09895Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (422 aa)
HR09_09880Carboxynorspermidine decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (378 aa)
HR09_09870Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. (330 aa)
HR09_09825Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)
rplY50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (192 aa)
bioBBiotin synthase; Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical-based mechanism; Belongs to the radical SAM superfamily. Biotin synthase family. (330 aa)
HR09_09770Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
HR09_09750Cation transporter; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. (302 aa)
HR09_09665DNA topoisomerase III; Derived by automated computational analysis using gene prediction method: Protein Homology. (680 aa)
HR09_09625Alkyl hydroperoxide reductase; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily. (188 aa)
HR09_09595Tetratricopeptide repeat protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (707 aa)
HR09_09500Glutamine cyclotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (333 aa)
HR09_09490Protoporphyrinogen oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. (466 aa)
udkUridine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology. (207 aa)
dnaJMolecular chaperone DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, [...] (383 aa)
Your Current Organism:
Porphyromonas gulae
NCBI taxonomy Id: 111105
Other names: ATCC 51700, CCUG 47701, DSM 15663, JCM 13865, NCTC 13180, P. gulae, Porphyromonas gulae Fournier et al. 2001 emend. Hahnke et al. 2016, strain Loup 1
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