20 items (Glarea lozoyensis) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GLAREA_11120	Concanavalin A-like lectins/glucanase. (333 aa)
	GLAREA_12599	RNA-binding, RBD. (719 aa)
	GLAREA_05133	zf-C3H1 domain-containing protein. (1274 aa)
	GLAREA_10118	RMI1_N domain-containing protein. (238 aa)
	GLAREA_10414	Uncharacterized protein. (311 aa)
	GLAREA_06257	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...] (270 aa)
	GLAREA_02715	P-loop containing nucleoside triphosphate hydrolase; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family. (725 aa)
	GLAREA_11884	RNA-binding, RBD. (617 aa)
	GLAREA_01004	Uncharacterized protein. (922 aa)
	GLAREA_00762	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (594 aa)
	GLAREA_02951	Uncharacterized protein. (614 aa)
	GLAREA_01959	Ribonuclease H-like protein. (793 aa)
	GLAREA_01639	P-loop containing nucleoside triphosphate hydrolase. (2004 aa)
	GLAREA_05716	C2H2-type domain-containing protein. (902 aa)
	GLAREA_08789	CCCH zinc finger. (465 aa)
	GLAREA_05454	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (581 aa)
	GLAREA_11070	DNA/RNA polymerase. (564 aa)
	GLAREA_04859	DNA-glycosylase. (1760 aa)
	GLAREA_06268	Concanavalin A-like lectins/glucanase. (435 aa)
	GLAREA_02571	Hect, E3 ligase catalytic. (1862 aa)

Your Current Organism:

Glarea lozoyensis

NCBI taxonomy Id: 1116229
Other names: G. lozoyensis ATCC 20868, Glarea lozoyensis ATCC 20868

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLAREA_00762	GLAREA_05454	S3CT50	S3DVY3	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.784
GLAREA_00762	GLAREA_05716	S3CT50	S3EDM2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	C2H2-type domain-containing protein.	0.578
GLAREA_00762	GLAREA_06257	S3CT50	S3D683	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.772
GLAREA_01004	GLAREA_05454	S3CY29	S3DVY3	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.621
GLAREA_01004	GLAREA_05716	S3CY29	S3EDM2	Uncharacterized protein.	C2H2-type domain-containing protein.	0.412
GLAREA_01004	GLAREA_06257	S3CY29	S3D683	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 5; Component of the cleavage factor Im (CFIm) complex that functions as an activator of the pre-mRNA 3'-end cleavage and polyadenylation processing required for the maturation of pre-mRNA into functional mRNAs. CFIm contributes to the recruitment of multiprotein complexes on specific sequences on the pre-mRNA 3'-end, so called cleavage and polyadenylation signals (pA signals). Most pre-mRNAs contain multiple pA signals, resulting in alternative cleavage and polyadenylation (APA) producing mRNAs with variable 3'-end formation. The [...]	0.513
GLAREA_01959	GLAREA_02951	S3CHU3	S3CKH9	Ribonuclease H-like protein.	Uncharacterized protein.	0.439
GLAREA_01959	GLAREA_05133	S3CHU3	S3DDL2	Ribonuclease H-like protein.	zf-C3H1 domain-containing protein.	0.601
GLAREA_01959	GLAREA_05454	S3CHU3	S3DVY3	Ribonuclease H-like protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.489
GLAREA_01959	GLAREA_11884	S3CHU3	S3CZX6	Ribonuclease H-like protein.	RNA-binding, RBD.	0.440
GLAREA_02571	GLAREA_10414	S3DJC4	S3DAI4	Hect, E3 ligase catalytic.	Uncharacterized protein.	0.819
GLAREA_02571	GLAREA_11884	S3DJC4	S3CZX6	Hect, E3 ligase catalytic.	RNA-binding, RBD.	0.649
GLAREA_02951	GLAREA_01959	S3CKH9	S3CHU3	Uncharacterized protein.	Ribonuclease H-like protein.	0.439
GLAREA_02951	GLAREA_05133	S3CKH9	S3DDL2	Uncharacterized protein.	zf-C3H1 domain-containing protein.	0.808
GLAREA_02951	GLAREA_05454	S3CKH9	S3DVY3	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.481
GLAREA_02951	GLAREA_08789	S3CKH9	S3DXF6	Uncharacterized protein.	CCCH zinc finger.	0.466
GLAREA_02951	GLAREA_11884	S3CKH9	S3CZX6	Uncharacterized protein.	RNA-binding, RBD.	0.634
GLAREA_02951	GLAREA_12599	S3CKH9	S3DH12	Uncharacterized protein.	RNA-binding, RBD.	0.523
GLAREA_05133	GLAREA_01959	S3DDL2	S3CHU3	zf-C3H1 domain-containing protein.	Ribonuclease H-like protein.	0.601
GLAREA_05133	GLAREA_02951	S3DDL2	S3CKH9	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.808