21 items (Glarea lozoyensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GLAREA_01639	P-loop containing nucleoside triphosphate hydrolase. (2004 aa)
	GLAREA_11670	RNA-binding, RBD. (362 aa)
	GLAREA_01226	Uncharacterized protein. (288 aa)
	GLAREA_02951	Uncharacterized protein. (614 aa)
	GLAREA_02699	Uncharacterized protein. (760 aa)
	GLAREA_00762	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (594 aa)
	GLAREA_00579	Phosphoinositide phospholipase C. (724 aa)
	GLAREA_11884	RNA-binding, RBD. (617 aa)
	GLAREA_12081	Ran BP2/NZF zinc finger-like protein. (365 aa)
	GLAREA_04622	RNA-binding, RBD. (196 aa)
	GLAREA_10587	Ion_trans domain-containing protein. (1165 aa)
	GLAREA_05133	zf-C3H1 domain-containing protein. (1274 aa)
	GLAREA_12599	RNA-binding, RBD. (719 aa)
	GLAREA_08787	Phosphoinositide phospholipase C. (586 aa)
	GLAREA_02571	Hect, E3 ligase catalytic. (1862 aa)
	GLAREA_07735	Phosphoinositide phospholipase C. (1147 aa)
	GLAREA_10225	RNA-binding, RBD. (182 aa)
	GLAREA_05454	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (581 aa)
	GLAREA_03665	RNA-binding, RBD. (828 aa)
	GLAREA_08789	CCCH zinc finger. (465 aa)
	GLAREA_05716	C2H2-type domain-containing protein. (902 aa)

Your Current Organism:

Glarea lozoyensis

NCBI taxonomy Id: 1116229
Other names: G. lozoyensis ATCC 20868, Glarea lozoyensis ATCC 20868

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLAREA_00762	GLAREA_04622	S3CT50	S3D757	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	RNA-binding, RBD.	0.574
GLAREA_00762	GLAREA_05454	S3CT50	S3DVY3	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.784
GLAREA_00762	GLAREA_05716	S3CT50	S3EDM2	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	C2H2-type domain-containing protein.	0.578
GLAREA_00762	GLAREA_10225	S3CT50	S3DR89	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	RNA-binding, RBD.	0.943
GLAREA_02571	GLAREA_11884	S3DJC4	S3CZX6	Hect, E3 ligase catalytic.	RNA-binding, RBD.	0.649
GLAREA_02951	GLAREA_05133	S3CKH9	S3DDL2	Uncharacterized protein.	zf-C3H1 domain-containing protein.	0.808
GLAREA_02951	GLAREA_05454	S3CKH9	S3DVY3	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.481
GLAREA_02951	GLAREA_08789	S3CKH9	S3DXF6	Uncharacterized protein.	CCCH zinc finger.	0.466
GLAREA_02951	GLAREA_11884	S3CKH9	S3CZX6	Uncharacterized protein.	RNA-binding, RBD.	0.634
GLAREA_02951	GLAREA_12599	S3CKH9	S3DH12	Uncharacterized protein.	RNA-binding, RBD.	0.523
GLAREA_04622	GLAREA_00762	S3D757	S3CT50	RNA-binding, RBD.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.574
GLAREA_04622	GLAREA_05454	S3D757	S3DVY3	RNA-binding, RBD.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.776
GLAREA_04622	GLAREA_10225	S3D757	S3DR89	RNA-binding, RBD.	RNA-binding, RBD.	0.762
GLAREA_04622	GLAREA_11884	S3D757	S3CZX6	RNA-binding, RBD.	RNA-binding, RBD.	0.782
GLAREA_05133	GLAREA_02951	S3DDL2	S3CKH9	zf-C3H1 domain-containing protein.	Uncharacterized protein.	0.808
GLAREA_05133	GLAREA_05454	S3DDL2	S3DVY3	zf-C3H1 domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.937
GLAREA_05133	GLAREA_05716	S3DDL2	S3EDM2	zf-C3H1 domain-containing protein.	C2H2-type domain-containing protein.	0.536
GLAREA_05133	GLAREA_08789	S3DDL2	S3DXF6	zf-C3H1 domain-containing protein.	CCCH zinc finger.	0.576
GLAREA_05133	GLAREA_10225	S3DDL2	S3DR89	zf-C3H1 domain-containing protein.	RNA-binding, RBD.	0.657
GLAREA_05133	GLAREA_11884	S3DDL2	S3CZX6	zf-C3H1 domain-containing protein.	RNA-binding, RBD.	0.666