5 items (Glarea lozoyensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GLAREA_07071	RNA-binding, RBD. (793 aa)
	GLAREA_11884	RNA-binding, RBD. (617 aa)
	GLAREA_02951	Uncharacterized protein. (614 aa)
	GLAREA_12599	RNA-binding, RBD. (719 aa)
	GLAREA_05454	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (581 aa)

Your Current Organism:

Glarea lozoyensis

NCBI taxonomy Id: 1116229
Other names: G. lozoyensis ATCC 20868, Glarea lozoyensis ATCC 20868

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
GLAREA_02951	GLAREA_05454	S3CKH9	S3DVY3	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.481
GLAREA_02951	GLAREA_07071	S3CKH9	S3E6Q1	Uncharacterized protein.	RNA-binding, RBD.	0.510
GLAREA_02951	GLAREA_11884	S3CKH9	S3CZX6	Uncharacterized protein.	RNA-binding, RBD.	0.634
GLAREA_02951	GLAREA_12599	S3CKH9	S3DH12	Uncharacterized protein.	RNA-binding, RBD.	0.523
GLAREA_05454	GLAREA_02951	S3DVY3	S3CKH9	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.481
GLAREA_05454	GLAREA_11884	S3DVY3	S3CZX6	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	RNA-binding, RBD.	0.998
GLAREA_07071	GLAREA_02951	S3E6Q1	S3CKH9	RNA-binding, RBD.	Uncharacterized protein.	0.510
GLAREA_11884	GLAREA_02951	S3CZX6	S3CKH9	RNA-binding, RBD.	Uncharacterized protein.	0.634
GLAREA_11884	GLAREA_05454	S3CZX6	S3DVY3	RNA-binding, RBD.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.998
GLAREA_12599	GLAREA_02951	S3DH12	S3CKH9	RNA-binding, RBD.	Uncharacterized protein.	0.523