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rpsO rpsO rplS rplS rpsP rpsP rpmA rpmA rplU rplU rpsI rpsI rpsJ rpsJ rpsG rpsG rplI rplI rpsR rpsR rpsF rpsF
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rpsORpsO; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa)
rplSRplS; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. (113 aa)
rpsPRpsP; Belongs to the bacterial ribosomal protein bS16 family. (90 aa)
rpmARpmA; Belongs to the bacterial ribosomal protein bL27 family. (103 aa)
rplURplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa)
rpsI30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa)
rpsJRpsJ; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa)
rpsG30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa)
rplI50S ribosomal protein L9; Binds to the 23S rRNA. (147 aa)
rpsRRpsR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (96 aa)
rpsFRpsF; Binds together with S18 to 16S ribosomal RNA. (94 aa)
Your Current Organism:
Paenibacillus mucilaginosus
NCBI taxonomy Id: 1116391
Other names: P. mucilaginosus 3016, Paenibacillus mucilaginosus 3016, Paenibacillus mucilaginosus str. 3016, Paenibacillus mucilaginosus strain 3016
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