STRINGSTRING
AFC34032.1 AFC34032.1 AFC27774.1 AFC27774.1 PM3016_75 PM3016_75 AFC33823.1 AFC33823.1 AFC33733.1 AFC33733.1 AFC33712.1 AFC33712.1 AFC33537.1 AFC33537.1 AFC33532.1 AFC33532.1 AFC33374.1 AFC33374.1 AFC33107.1 AFC33107.1 rph rph AFC32748.1 AFC32748.1 AFC32599.1 AFC32599.1 AFC32256.1 AFC32256.1 AFC32000.1 AFC32000.1 AFC31965.1 AFC31965.1 rnhB rnhB pnp pnp rny rny deoC deoC AFC31440.1 AFC31440.1 deoB deoB AFC31437.1 AFC31437.1 AFC27401.1 AFC27401.1 AFC30619.1 AFC30619.1 AFC30430.1 AFC30430.1 AFC30393.1 AFC30393.1 AFC29921.1 AFC29921.1 AFC27271.1 AFC27271.1 xseB xseB xseA xseA AFC28776.1 AFC28776.1 AFC28696.1 AFC28696.1 AFC28680.1 AFC28680.1 AFC28472.1 AFC28472.1 csrA csrA
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AFC34032.1Hypothetical protein. (100 aa)
AFC27774.1Multifunctional protein: 5-nucleotidase 2,3-cyclic-nucleotide 2-phosphodiesterase; Belongs to the 5'-nucleotidase family. (724 aa)
PM3016_75Hypothetical protein. (79 aa)
AFC33823.1Hypothetical protein. (574 aa)
AFC33733.1YwfO. (427 aa)
AFC33712.1YabN. (506 aa)
AFC33537.1HD domain-containing protein. (267 aa)
AFC33532.15'-Nucleotidase domain-containing protein; Belongs to the 5'-nucleotidase family. (592 aa)
AFC33374.1Putative nucleotidase; Belongs to the 5'(3')-deoxyribonucleotidase family. (186 aa)
AFC33107.12',3'-cyclic-nucleotide 2'-phosphodiesterase; Belongs to the 5'-nucleotidase family. (538 aa)
rphRph; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (253 aa)
AFC32748.1RdgB/HAM1 family non-canonical purine NTP pyrophosphatase; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. (215 aa)
AFC32599.1Hypothetical protein. (1505 aa)
AFC32256.1Cdd; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (138 aa)
AFC32000.1Adenosylhomocysteine nucleosidase; Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S-adenosylhomocysteine (SAH/AdoHcy) to adenine and the corresponding thioribose, 5'- methylthioribose and S-ribosylhomocysteine, respectively. Belongs to the PNP/UDP phosphorylase family. MtnN subfamily. (234 aa)
AFC31965.1YicC domain-containing protein. (292 aa)
rnhBRibonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. (209 aa)
pnpPnp; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (700 aa)
rny2'3'-cyclic-nucleotide 2'-phosphodiesterase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (513 aa)
deoCDeoC; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily. (221 aa)
AFC31440.1Cdd2; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. (132 aa)
deoBDeoB; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family. (395 aa)
AFC31437.1DeoD. (56 aa)
AFC27401.1DEAD/DEAH box helicase domain-containing protein. (578 aa)
AFC30619.1Hypothetical protein. (841 aa)
AFC30430.1Hypothetical protein. (59 aa)
AFC30393.1Metal dependent phosphohydrolase. (195 aa)
AFC29921.1YpjD. (113 aa)
AFC27271.1Deoxyguanosinetriphosphate triphosphohydrolase; Belongs to the dGTPase family. Type 2 subfamily. (438 aa)
xseBXseB; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (82 aa)
xseAExodeoxyribonuclease VII large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (466 aa)
AFC28776.1Hypothetical protein. (495 aa)
AFC28696.1Hypothetical protein. (566 aa)
AFC28680.1Cytosine/adenosine deaminase. (161 aa)
AFC28472.1YunD; Belongs to the 5'-nucleotidase family. (485 aa)
csrACarbon storage regulator, CsrA; A translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Usually binds in the 5'- UTR at or near the Shine-Dalgarno sequence preventing ribosome-binding, thus repressing translation. Its main target seems to be the major flagellin gene, while its function is anatagonized by FliW. (78 aa)
Your Current Organism:
Paenibacillus mucilaginosus
NCBI taxonomy Id: 1116391
Other names: P. mucilaginosus 3016, Paenibacillus mucilaginosus 3016, Paenibacillus mucilaginosus str. 3016, Paenibacillus mucilaginosus strain 3016
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