Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFC27147.1 | AFC28371.1 | PM3016_165 | PM3016_1446 | PcrA. | Replicative DNA helicase. | 0.435 |
| AFC27147.1 | AFC29814.1 | PM3016_165 | PM3016_2944 | PcrA. | YqxK. | 0.864 |
| AFC27147.1 | AFC30080.1 | PM3016_165 | PM3016_3225 | PcrA. | DNA topoisomerase III. | 0.440 |
| AFC27147.1 | AFC31348.1 | PM3016_165 | PM3016_4602 | PcrA. | UvrD/REP helicase. | 0.920 |
| AFC27147.1 | AFC31750.1 | PM3016_165 | PM3016_5020 | PcrA. | UvrD/REP helicase. | 0.919 |
| AFC27147.1 | AFC32167.1 | PM3016_165 | PM3016_5467 | PcrA. | Replicative DNA helicase. | 0.435 |
| AFC27147.1 | AFC33022.1 | PM3016_165 | PM3016_6390 | PcrA. | HRDC domain-containing protein. | 0.777 |
| AFC27147.1 | AFC34028.1 | PM3016_165 | PM3016_7462 | PcrA. | DnaC; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. | 0.536 |
| AFC27147.1 | PM3016_21 | PM3016_165 | PM3016_21 | PcrA. | ATP-dependent DNA helicase replicase. | 0.919 |
| AFC27147.1 | dnaG | PM3016_165 | PM3016_5554 | PcrA. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.645 |
| AFC27147.1 | recG | PM3016_165 | PM3016_5232 | PcrA. | RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily. | 0.517 |
| AFC27147.1 | ruvA | PM3016_165 | PM3016_6030 | PcrA. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.491 |
| AFC27147.1 | ruvB | PM3016_165 | PM3016_6029 | PcrA. | RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.567 |
| AFC27147.1 | topA | PM3016_165 | PM3016_5170 | PcrA. | TopA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally [...] | 0.560 |
| AFC28371.1 | AFC27147.1 | PM3016_1446 | PM3016_165 | Replicative DNA helicase. | PcrA. | 0.435 |
| AFC28371.1 | AFC30080.1 | PM3016_1446 | PM3016_3225 | Replicative DNA helicase. | DNA topoisomerase III. | 0.532 |
| AFC28371.1 | dnaG | PM3016_1446 | PM3016_5554 | Replicative DNA helicase. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.858 |
| AFC28371.1 | topA | PM3016_1446 | PM3016_5170 | Replicative DNA helicase. | TopA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally [...] | 0.532 |
| AFC29814.1 | AFC27147.1 | PM3016_2944 | PM3016_165 | YqxK. | PcrA. | 0.864 |
| AFC29814.1 | AFC33725.1 | PM3016_2944 | PM3016_7148 | YqxK. | SspF. | 0.524 |
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