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| | rplM | RplM; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. (145 aa) |
| | rplQ | RplQ. (121 aa) |
| | rpsK | RpsK; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. (131 aa) |
| | rpmJ | 50S ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family. (37 aa) |
| | rplO | 50S ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. (146 aa) |
| | rpmD | 50S ribosomal protein L30. (62 aa) |
| | rpsE | RpsE; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. (165 aa) |
| | rplR | RplR; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. (122 aa) |
| | rpsH | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. (132 aa) |
| | rplE | RplE; This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits; this bridge is implicated in subunit movement. Contacts the P site tRNA; the 5S rRNA and some of its associated proteins might help stabilize positioning of ribosome-bound tRNAs. (180 aa) |
| | rpsQ | RpsQ; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. (87 aa) |
| | rpmC | RpmC; Belongs to the universal ribosomal protein uL29 family. (66 aa) |
| | rpsC | RpsC; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. (221 aa) |
| | rplB | RplB; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. (276 aa) |
| | rplW | RplW; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family. (96 aa) |
| | rplC | 50S ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit; Belongs to the universal ribosomal protein uL3 family. (208 aa) |
| | rpsJ | RpsJ; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. (102 aa) |
| | rpsG | 30S ribosomal protein S7; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit. Is located at the subunit interface close to the decoding center, probably blocks exit of the E-site tRNA; Belongs to the universal ribosomal protein uS7 family. (156 aa) |
| | rplL | RplL; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. Is thus essential for accurate translation; Belongs to the bacterial ribosomal protein bL12 family. (120 aa) |
| | rplJ | RplJ; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family. (170 aa) |
| | rplA | RplA; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release. (230 aa) |
| | rplK | RplK; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors. (141 aa) |
| | rpmG | Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family. (49 aa) |
| | AFC33685.1 | Dus1; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family. (330 aa) |
| | AFC33706.1 | RNA binding S1 domain-containing protein. (167 aa) |
| | AFC33711.1 | Hup2; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa) |
| | rplY | Ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily. (217 aa) |
| | rnmV | YabF; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step. (185 aa) |
| | AFC33733.1 | YwfO. (427 aa) |
| | AFC33739.1 | DNA polymerase III subunit delta'. (325 aa) |
| | recR | RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. (198 aa) |
| | AFC33749.1 | Hypothetical protein; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection. (103 aa) |
| | rpmE | Ribosomal protein L31; Binds the 23S rRNA. (65 aa) |
| | AFC33764.1 | Metallophosphoesterase. (293 aa) |
| | AFC33785.1 | SWF/SNF family helicase. (984 aa) |
| | AFC27682.1 | Hypothetical protein. (108 aa) |
| | AFC33972.1 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (239 aa) |
| | AFC34010.1 | DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. (422 aa) |
| | AFC34028.1 | DnaC; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily. (455 aa) |
| | rpsR | RpsR; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family. (96 aa) |
| | rpsF | RpsF; Binds together with S18 to 16S ribosomal RNA. (94 aa) |
| | AFC34043.1 | Hypothetical protein. (164 aa) |
| | AFC34045.1 | Spo0J-like protein, ParB-like nuclease domain-containing protein; Belongs to the ParB family. (286 aa) |
| | rpmH | 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family. (44 aa) |
| | PM3016_91 | Hypothetical protein. (132 aa) |
| | AFC28074.1 | DnaB. (502 aa) |
| | AFC28075.1 | AAA ATPase. (318 aa) |
| | AFC28077.1 | TrxA; Belongs to the thioredoxin family. (105 aa) |
| | AFC28192.1 | Hypothetical protein. (140 aa) |
| | AFC28216.1 | Hypothetical protein. (335 aa) |
| | AFC28297.1 | Hypothetical protein. (509 aa) |
| | AFC28299.1 | Putative ethanolamine ammonia-lyase light chain; Belongs to the EutC family. (227 aa) |
| | AFC28313.1 | Metallophosphoesterase. (381 aa) |
| | pdxS | PdxS; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (293 aa) |
| | AFC28330.1 | Hypothetical protein. (449 aa) |
| | AFC28360.1 | Hypothetical protein. (125 aa) |
| | AFC28370.1 | Putative prophage replication protein O. (332 aa) |
| | AFC28371.1 | Replicative DNA helicase. (425 aa) |
| | AFC28600.1 | Short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (261 aa) |
| | hpf-2 | Ribosome-associated protein Y; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (179 aa) |
| | AFC28710.1 | AraD. (244 aa) |
| | AFC27166.1 | TPR repeat-containing protein. (584 aa) |
| | AFC28756.1 | XRE family transcriptional regulator. (221 aa) |
| | AFC28798.1 | RND family efflux transporter MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (367 aa) |
| | AFC28818.1 | DEAD/DEAH box helicase domain-containing protein; Belongs to the DEAD box helicase family. (537 aa) |
| | AFC28890.1 | Helicase protein. (600 aa) |
| | AFC28958.1 | ADP-ribosylation/Crystallin J1. (461 aa) |
| | AFC29001.1 | Hypothetical protein. (631 aa) |
| | AFC29067.1 | Putative uridine kinase. (223 aa) |
| | AFC29206.1 | Alpha/beta hydrolase fold-3 domain-containing protein. (318 aa) |
| | AFC29236.1 | GutR. (838 aa) |
| | AFC27218.1 | NAD-dependent epimerase/dehydratase. (268 aa) |
| | AFC29288.1 | Alpha/beta hydrolase fold-3 domain-containing protein. (368 aa) |
| | AFC29345.1 | Thioredoxin; Belongs to the thioredoxin family. (108 aa) |
| | AFC29452.1 | TfoX domain-containing protein. (105 aa) |
| | AFC29799.1 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. (567 aa) |
| | AFC29845.1 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (229 aa) |
| | AFC29863.1 | Putative primase-helicase. (507 aa) |
| | AFC29872.1 | RNA binding S1 domain-containing protein. (414 aa) |
| | AFC29887.1 | Hup; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. (90 aa) |
| | AFC29900.1 | Chorismate mutase; Catalyzes the Claisen rearrangement of chorismate to prephenate. Probably involved in the aromatic amino acid biosynthesis. (122 aa) |
| | AFC29912.1 | Hypothetical protein. (168 aa) |
| | AFC29932.1 | Hypothetical protein. (155 aa) |
| | nth | Nth; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate. (231 aa) |
| | AFC29954.1 | ParE. (657 aa) |
| | AFC30026.1 | CrtNb. (429 aa) |
| | AFC30031.1 | Phytoene dehydrogenase. (509 aa) |
| | AFC30032.1 | CrtNc. (571 aa) |
| | AFC30071.1 | Hypothetical protein. (115 aa) |
| | AFC30080.1 | DNA topoisomerase III. (723 aa) |
| | AFC30104.1 | Hypothetical protein. (433 aa) |
| | AFC30112.1 | Two-component sensor histidine kinase. (353 aa) |
| | AFC30131.1 | Putative DNA topoisomerase III. (680 aa) |
| | udk | Udk. (204 aa) |
| | AFC30210.1 | Hypothetical protein. (360 aa) |
| | AFC30356.1 | Metallophosphoesterase. (255 aa) |
| | AFC30361.1 | Hypothetical protein. (273 aa) |
| | AFC30368.1 | Hypothetical protein. (269 aa) |
| | AFC30425.1 | Hypothetical protein; Belongs to the SOS response-associated peptidase family. (225 aa) |
| | AFC30600.1 | Lipase/esterase. (307 aa) |
| | AFC30622.1 | Phosphoesterase. (366 aa) |
| | AFC27361.1 | Leucine-rich repeat protein-like protein. (345 aa) |
| | AFC30702.1 | Hypothetical protein. (500 aa) |
| | AFC27364.1 | Phytoene dehydrogenase enzyme. (437 aa) |
| | AFC30908.1 | Hypothetical protein. (324 aa) |
| | AFC30959.1 | Ribulose-bisphosphate carboxylase; Belongs to the RuBisCO large chain family. (424 aa) |
| | AFC27401.1 | DEAD/DEAH box helicase domain-containing protein. (578 aa) |
| | AFC31222.1 | Hypothetical protein. (417 aa) |
| | AFC31264.1 | Adenylate/guanylate cyclase. (1343 aa) |
| | AFC31291.1 | ATPase. (363 aa) |
| | AFC31344.1 | YoqW; Belongs to the SOS response-associated peptidase family. (225 aa) |
| | cutC | Putative copper homeostasis protein CutC; Participates in the control of copper homeostasis. Belongs to the CutC family. (234 aa) |
| | AFC31424.1 | Hypothetical protein. (131 aa) |
| | AFC31478.1 | Thioredoxin; Belongs to the thioredoxin family. (116 aa) |
| | AFC31738.1 | TraR/DksA family transcriptional regulator. (244 aa) |
| | AFC31798.1 | Hypothetical protein; Involved in 1,2-propanediol (1,2-PD) degradation by catalyzing the conversion of propanoyl-CoA to propanoyl-phosphate. (189 aa) |
| | rpsO | RpsO; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. (89 aa) |
| | AFC31834.1 | Phosphoesterase, RecJ domain-containing protein. (329 aa) |
| | AFC31837.1 | RplGA. (99 aa) |
| | rpsB | RpsB; Belongs to the universal ribosomal protein uS2 family. (232 aa) |
| | topA | TopA; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally [...] (701 aa) |
| | rpsP | RpsP; Belongs to the bacterial ribosomal protein bS16 family. (90 aa) |
| | AFC31931.1 | Hypothetical protein. (230 aa) |
| | rpmB | Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family. (62 aa) |
| | priA | Primosome assembly protein PriA; Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA; Belongs to the helicase family. PriA subfamily. (833 aa) |
| | AFC32084.1 | Initiation of chromosome replication. (227 aa) |
| | ackA | AckA; Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction; Belongs to the acetokinase family. (404 aa) |
| | AFC32095.1 | Hypothetical protein. (317 aa) |
| | AFC32097.1 | MtnW. (425 aa) |
| | mtnB | MtnB; Catalyzes the dehydration of methylthioribulose-1-phosphate (MTRu-1-P) into 2,3-diketo-5-methylthiopentyl-1-phosphate (DK-MTP-1-P). Belongs to the aldolase class II family. MtnB subfamily. (213 aa) |
| | AFC27508.1 | SWF/SNF family helicase. (987 aa) |
| | AFC32167.1 | Replicative DNA helicase. (425 aa) |
| | AFC32168.1 | Putative prophage replication protein O. (327 aa) |
| | AFC32187.1 | DnaK suppressor protein. (253 aa) |
| | AFC32190.1 | RNA-binding S4 domain-containing protein. (260 aa) |
| | AFC27518.1 | UDP-glucose 4-epimerase. (309 aa) |
| | dnaG | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. (611 aa) |
| | recO | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. (248 aa) |
| | AFC32257.1 | Diacylglycerol kinase/PAP2 family protein. (233 aa) |
| | rpsT | RpsT; Binds directly to 16S ribosomal RNA. (90 aa) |
| | AFC32305.1 | CMP/dCMP deaminase, zinc-binding protein. (169 aa) |
| | AFC32335.1 | Hypothetical protein. (819 aa) |
| | AFC32479.1 | Class II aldolase/adducin family protein. (428 aa) |
| | AFC32609.1 | Amine oxidase. (511 aa) |
| | AFC32628.1 | Hypothetical protein. (412 aa) |
| | AFC32655.1 | AAA ATPase central domain-containing protein. (459 aa) |
| | dtd | Dtd; An aminoacyl-tRNA editing enzyme that deacylates mischarged D-aminoacyl-tRNAs. Also deacylates mischarged glycyl-tRNA(Ala), protecting cells against glycine mischarging by AlaRS. Acts via tRNA- based rather than protein-based catalysis; rejects L-amino acids rather than detecting D-amino acids in the active site. By recycling D- aminoacyl-tRNA to D-amino acids and free tRNA molecules, this enzyme counteracts the toxicity associated with the formation of D-aminoacyl- tRNA entities in vivo and helps enforce protein L-homochirality. Belongs to the DTD family. (148 aa) |
| | rpmA | RpmA; Belongs to the bacterial ribosomal protein bL27 family. (103 aa) |
| | rplU | RplU; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. (103 aa) |
| | AFC32710.1 | Hypothetical protein; Belongs to the UPF0758 family. (229 aa) |
| | AFC32778.1 | Hypothetical protein. (153 aa) |
| | AFC32810.1 | Potassium channel protein. (340 aa) |
| | AFC32850.1 | DEAD/DEAH box helicase domain-containing protein. (510 aa) |
| | AFC32869.1 | YoqW; Belongs to the SOS response-associated peptidase family. (225 aa) |
| | AFC32946.1 | Hypothetical protein. (247 aa) |
| | AFC32966.1 | XRE family transcriptional regulator. (122 aa) |
| | AFC33000.1 | XRE family transcriptional regulator. (64 aa) |
| | rpmI | RpmI; Belongs to the bacterial ribosomal protein bL35 family. (65 aa) |
| | AFC33022.1 | HRDC domain-containing protein. (336 aa) |
| | AFC33039.1 | YvqK; Belongs to the Cob(I)alamin adenosyltransferase family. (189 aa) |
| | AFC33151.1 | Hypothetical protein. (232 aa) |
| | AFC33199.1 | ADP-ribosyl- hydrolase. (295 aa) |
| | cobB | NpdA; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily. (249 aa) |
| | AFC33397.1 | NAD-dependent protein deacetylase SIR2 family-like protein. (238 aa) |
| | AFC33467.1 | TrxA2; Belongs to the thioredoxin family. (105 aa) |
| | AFC33539.1 | Hypothetical protein. (750 aa) |
| | pdxS-2 | PdxS4; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. (296 aa) |
| | gyrB | GyrB; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner. (637 aa) |
| | rpsI | 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family. (130 aa) |
| | AFC28016.1 | Hypothetical protein. (336 aa) |
| | AFC28033.1 | Toprim domain-containing protein. (119 aa) |
| | hpf | YvyD; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (185 aa) |
