Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFC27468.1 | AFC29607.1 | PM3016_501 | PM3016_2727 | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | YhxA; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.626 |
| AFC27468.1 | AFC33584.1 | PM3016_501 | PM3016_6993 | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | PatA2; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 0.589 |
| AFC27468.1 | bioA | PM3016_501 | PM3016_465 | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Catalyzes the transfer of the alpha-amino group from S- adenosyl-L-methionine (SAM) to 7-keto-8-aminopelargonic acid (KAPA) to form 7,8-diaminopelargonic acid (DAPA). It is the only animotransferase known to utilize SAM as an amino donor; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. BioA subfamily. | 0.977 |
| AFC27468.1 | cobQ | PM3016_501 | PM3016_6408 | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | Cobyric acid synthase; Catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation. Belongs to the CobB/CobQ family. CobQ subfamily. | 0.411 |
| AFC27468.1 | glyA | PM3016_501 | PM3016_41 | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | GlyA; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.436 |
| AFC27614.1 | AFC32821.1 | PM3016_650 | PM3016_6180 | Putative aminotransferase. | Putative transcriptional regulator. | 0.762 |
| AFC28354.1 | AFC32240.1 | PM3016_1429 | PM3016_5544 | Csd; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | Cysteine desulfurase. | 0.587 |
| AFC28354.1 | AFC32650.1 | PM3016_1429 | PM3016_5997 | Csd; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | Class V aminotransferase. | 0.587 |
| AFC28354.1 | AFC33019.1 | PM3016_1429 | PM3016_6387 | Csd; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine. | MetB. | 0.903 |
| AFC29607.1 | AFC27468.1 | PM3016_2727 | PM3016_501 | YhxA; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | 8-amino-7-oxononanoate synthase; Catalyzes the decarboxylative condensation of pimeloyl-[acyl- carrier protein] and L-alanine to produce 8-amino-7-oxononanoate (AON), [acyl-carrier protein], and carbon dioxide. | 0.626 |
| AFC29632.1 | AFC31560.1 | PM3016_2756 | PM3016_4824 | CysD. | Putative methionine gamma-lyase. | 0.440 |
| AFC29632.1 | AFC32486.1 | PM3016_2756 | PM3016_5810 | CysD. | Class I and II aminotransferase. | 0.932 |
| AFC29632.1 | AFC33019.1 | PM3016_2756 | PM3016_6387 | CysD. | MetB. | 0.938 |
| AFC30007.1 | AFC32036.1 | PM3016_3152 | PM3016_5333 | YnbB. | SpeA. | 0.655 |
| AFC30007.1 | AFC33743.1 | PM3016_3152 | PM3016_7166 | YnbB. | YaaO. | 0.750 |
| AFC30297.1 | gcvPA | PM3016_3464 | PM3016_6958 | PucG. | GcvPA; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein. | 0.806 |
| AFC30297.1 | gcvPB | PM3016_3464 | PM3016_6959 | PucG. | GcvPB; The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; Belongs to the GcvP family. C-terminal subunit subfamily. | 0.834 |
| AFC30297.1 | glyA | PM3016_3464 | PM3016_41 | PucG. | GlyA; Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF-independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism. | 0.848 |
| AFC30366.1 | AFC31110.1 | PM3016_3539 | PM3016_4340 | DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. | Hypothetical protein. | 0.433 |
| AFC31109.1 | AFC31110.1 | PM3016_4339 | PM3016_4340 | Hypothetical protein; Belongs to the DegT/DnrJ/EryC1 family. | Hypothetical protein. | 0.866 |
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