(21 nodes) ClpP/crotonase-like domain superfamily network (Simiduia agarivorans)

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proteins of unknown 3D structure

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Your Input:
	M5M_06340	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase. (254 aa)
	accD	Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl-CoA; Belongs to the AccD/PCCB family. (287 aa)
	fadB	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family. (716 aa)
	clpP	ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family. (208 aa)
	M5M_01895	COG1024 Enoyl-CoA hydratase/carnithine racemase. (271 aa)
	M5M_01905	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta). (534 aa)
	M5M_02120	Inner membrane peptidase; COG0616 Periplasmic serine proteases (ClpP class). (363 aa)
	M5M_03035	COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (699 aa)
	M5M_04885	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase. (289 aa)
	accA	acetyl-CoA carboxylase carboxyltransferase subunit alpha; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. (318 aa)
	M5M_05575	Signal peptide peptidase SppA, 67K type; COG0616 Periplasmic serine proteases (ClpP class). (607 aa)
	M5M_07690	Hypothetical protein. (490 aa)
	M5M_08495	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase. (664 aa)
	M5M_10065	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta). (535 aa)
	M5M_10070	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (261 aa)
	M5M_10620	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family. (258 aa)
	M5M_10630	Enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase. (369 aa)
	M5M_14305	C-terminal processing peptidase; COG0793 Periplasmic protease; Belongs to the peptidase S41A family. (468 aa)
	M5M_16450	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta). (563 aa)
	M5M_16840	COG1024 Enoyl-CoA hydratase/carnithine racemase. (263 aa)
	fadB-2	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family. (715 aa)

Your Current Organism:

Simiduia agarivorans

NCBI taxonomy Id: 1117647
Other names: S. agarivorans SA1 = DSM 21679, Simiduia agarivorans DSM 21679, Simiduia agarivorans DSM 21679 = SA1, Simiduia agarivorans SA1, Simiduia agarivorans SA1 = DSM 21679

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
M5M_01895	M5M_01905	M5M_01895	M5M_01905	COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.984
M5M_01895	M5M_10065	M5M_01895	M5M_10065	COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.418
M5M_01895	fadB	M5M_01895	M5M_01685	COG1024 Enoyl-CoA hydratase/carnithine racemase.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.490
M5M_01895	fadB-2	M5M_01895	M5M_18535	COG1024 Enoyl-CoA hydratase/carnithine racemase.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.447
M5M_01905	M5M_01895	M5M_01905	M5M_01895	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.984
M5M_01905	M5M_08495	M5M_01905	M5M_08495	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.532
M5M_01905	M5M_10070	M5M_01905	M5M_10070	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	COG1024 Enoyl-CoA hydratase/carnithine racemase; Belongs to the enoyl-CoA hydratase/isomerase family.	0.526
M5M_01905	fadB	M5M_01905	M5M_01685	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.532
M5M_01905	fadB-2	M5M_01905	M5M_18535	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.532
M5M_04885	M5M_08495	M5M_04885	M5M_08495	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.931
M5M_04885	M5M_10065	M5M_04885	M5M_10065	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.921
M5M_04885	M5M_10630	M5M_04885	M5M_10630	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.610
M5M_04885	fadB	M5M_04885	M5M_01685	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.949
M5M_04885	fadB-2	M5M_04885	M5M_18535	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.949
M5M_06340	M5M_08495	M5M_06340	M5M_08495	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.409
M5M_06340	fadB	M5M_06340	M5M_01685	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.	0.574
M5M_06340	fadB-2	M5M_06340	M5M_18535	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	Multifunctional fatty acid oxidation complex subunit alpha; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.	0.561
M5M_08495	M5M_01905	M5M_08495	M5M_01905	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	COG4799 Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta).	0.532
M5M_08495	M5M_04885	M5M_08495	M5M_04885	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.931
M5M_08495	M5M_06340	M5M_08495	M5M_06340	3-hydroxyacyl-CoA dehydrogenase; COG1024 Enoyl-CoA hydratase/carnithine racemase.	enoyl-CoA hydratase/isomerase family protein; COG1024 Enoyl-CoA hydratase/carnithine racemase.	0.409

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