57 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H257_18131	Uncharacterized protein. (4676 aa)
	H257_17304	Uncharacterized protein. (558 aa)
	H257_17312	Uncharacterized protein. (4609 aa)
	H257_16929	Uncharacterized protein. (3985 aa)
	H257_16332	Uncharacterized protein. (185 aa)
	H257_15640	Uncharacterized protein. (687 aa)
	H257_15295	F-actin-capping protein subunit beta; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (279 aa)
	H257_15118	Uncharacterized protein. (459 aa)
	H257_14049	Dynein light chain roadblock. (109 aa)
	H257_14408	Uncharacterized protein. (813 aa)
	H257_13688	Uncharacterized protein. (4371 aa)
	H257_13499	Uncharacterized protein. (4178 aa)
	H257_13888	Uncharacterized protein. (4216 aa)
	B5M09_010872	Dynein light chain. (111 aa)
	H257_12686	Uncharacterized protein. (653 aa)
	B5M09_002619	Uncharacterized protein. (126 aa)
	H257_11203	Uncharacterized protein. (351 aa)
	H257_10308	CAP-Gly domain-containing protein. (1245 aa)
	H257_09990	Uncharacterized protein. (777 aa)
	H257_10218	WD_REPEATS_REGION domain-containing protein. (586 aa)
	H257_10037	Uncharacterized protein. (121 aa)
	H257_09544	Uncharacterized protein. (147 aa)
	H257_09144	Dynein light chain. (92 aa)
	H257_08698	Tubulin alpha chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. Belongs to the tubulin family. (453 aa)
	B5M09_011430	Dynein light chain. (103 aa)
	H257_08697	Tubulin alpha chain. (760 aa)
	H257_08416	Uncharacterized protein. (211 aa)
	H257_07914	WD_REPEATS_REGION domain-containing protein. (955 aa)
	H257_07663	Uncharacterized protein. (224 aa)
	H257_06671	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (433 aa)
	H257_07090	Uncharacterized protein. (119 aa)
	H257_06718	Uncharacterized protein. (129 aa)
	H257_06589	Uncharacterized protein. (4159 aa)
	H257_06354	Uncharacterized protein. (383 aa)
	H257_05531	Uncharacterized protein. (121 aa)
	H257_05930	Uncharacterized protein. (881 aa)
	H257_05341	Uncharacterized protein. (239 aa)
	H257_04309	Uncharacterized protein. (4993 aa)
	H257_04334	Uncharacterized protein. (4068 aa)
	H257_04029	Uncharacterized protein. (4673 aa)
	H257_04112	Dynein light chain roadblock. (101 aa)
	H257_04338	Uncharacterized protein. (4668 aa)
	H257_03817	Uncharacterized protein. (388 aa)
	DYB25_003992	Dynein light chain. (103 aa)
	B5M09_012306	Dynein light chain. (96 aa)
	H257_02603	Uncharacterized protein. (4098 aa)
	B5M09_002802	Robl_LC7 domain-containing protein. (125 aa)
	B5M09_004415	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain. (446 aa)
	H257_02186	WD_REPEATS_REGION domain-containing protein. (905 aa)
	H257_00935	Dynein light chain. (116 aa)
	H257_01548	Uncharacterized protein. (4583 aa)
	H257_01385	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments. (284 aa)
	B5M09_001181	Dynein light chain. (98 aa)
	B5M09_007095	Uncharacterized protein. (4553 aa)
	H257_00389	Uncharacterized protein. (4250 aa)
	B5M09_000893	Dynein light chain. (89 aa)
	H257_00861	Uncharacterized protein. (4254 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_000893	B5M09_002619	W4HCB9	W4G038	Dynein light chain.	Uncharacterized protein.	0.685
B5M09_000893	B5M09_002802	W4HCB9	W4H2Y7	Dynein light chain.	Robl_LC7 domain-containing protein.	0.770
B5M09_000893	B5M09_004415	W4HCB9	W4H3J1	Dynein light chain.	Tubulin beta chain; Tubulin is the major constituent of microtubules. It binds two moles of GTP, one at an exchangeable site on the beta chain and one at a non-exchangeable site on the alpha chain.	0.504
B5M09_000893	B5M09_007095	W4HCB9	W4HAF3	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_00389	W4HCB9	W4HAH8	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_00861	W4HCB9	W4HED7	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_01385	W4HCB9	W4HA57	Dynein light chain.	F-actin-capping protein subunit alpha; F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.	0.531
B5M09_000893	H257_01548	W4HCB9	W4H9L1	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_02186	W4HCB9	W4H5E2	Dynein light chain.	WD_REPEATS_REGION domain-containing protein.	0.829
B5M09_000893	H257_02603	W4HCB9	W4H2B9	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_03817	W4HCB9	W4GYF7	Dynein light chain.	Uncharacterized protein.	0.602
B5M09_000893	H257_04029	W4HCB9	W4GWG9	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_04112	W4HCB9	W4GWS4	Dynein light chain.	Dynein light chain roadblock.	0.846
B5M09_000893	H257_04309	W4HCB9	W4GVD1	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_04334	W4HCB9	W4GVG3	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_04338	W4HCB9	W4GXC8	Dynein light chain.	Uncharacterized protein.	0.549
B5M09_000893	H257_05341	W4HCB9	W4GRW1	Dynein light chain.	Uncharacterized protein.	0.531
B5M09_000893	H257_05531	W4HCB9	W4GQJ2	Dynein light chain.	Uncharacterized protein.	0.702
B5M09_000893	H257_05930	W4HCB9	W4GR83	Dynein light chain.	Uncharacterized protein.	0.743
B5M09_000893	H257_06354	W4HCB9	W4GPU9	Dynein light chain.	Uncharacterized protein.	0.635