21 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H257_14049	Dynein light chain roadblock. (109 aa)
	H257_14408	Uncharacterized protein. (813 aa)
	B5M09_010872	Dynein light chain. (111 aa)
	B5M09_002619	Uncharacterized protein. (126 aa)
	H257_11203	Uncharacterized protein. (351 aa)
	H257_10218	WD_REPEATS_REGION domain-containing protein. (586 aa)
	H257_10037	Uncharacterized protein. (121 aa)
	H257_09544	Uncharacterized protein. (147 aa)
	H257_09144	Dynein light chain. (92 aa)
	B5M09_011430	Dynein light chain. (103 aa)
	H257_07914	WD_REPEATS_REGION domain-containing protein. (955 aa)
	H257_06718	Uncharacterized protein. (129 aa)
	H257_05531	Uncharacterized protein. (121 aa)
	H257_05930	Uncharacterized protein. (881 aa)
	H257_04112	Dynein light chain roadblock. (101 aa)
	DYB25_003992	Dynein light chain. (103 aa)
	B5M09_012306	Dynein light chain. (96 aa)
	B5M09_002802	Robl_LC7 domain-containing protein. (125 aa)
	H257_02186	WD_REPEATS_REGION domain-containing protein. (905 aa)
	B5M09_001181	Dynein light chain. (98 aa)
	B5M09_000893	Dynein light chain. (89 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_000893	B5M09_002619	W4HCB9	W4G038	Dynein light chain.	Uncharacterized protein.	0.685
B5M09_000893	B5M09_002802	W4HCB9	W4H2Y7	Dynein light chain.	Robl_LC7 domain-containing protein.	0.770
B5M09_000893	H257_02186	W4HCB9	W4H5E2	Dynein light chain.	WD_REPEATS_REGION domain-containing protein.	0.829
B5M09_000893	H257_04112	W4HCB9	W4GWS4	Dynein light chain.	Dynein light chain roadblock.	0.846
B5M09_000893	H257_05531	W4HCB9	W4GQJ2	Dynein light chain.	Uncharacterized protein.	0.702
B5M09_000893	H257_05930	W4HCB9	W4GR83	Dynein light chain.	Uncharacterized protein.	0.743
B5M09_000893	H257_06718	W4HCB9	W4GM31	Dynein light chain.	Uncharacterized protein.	0.702
B5M09_000893	H257_07914	W4HCB9	W4GH00	Dynein light chain.	WD_REPEATS_REGION domain-containing protein.	0.743
B5M09_000893	H257_09544	W4HCB9	W4GA40	Dynein light chain.	Uncharacterized protein.	0.685
B5M09_000893	H257_10037	W4HCB9	W4G8N9	Dynein light chain.	Uncharacterized protein.	0.702
B5M09_000893	H257_10218	W4HCB9	W4G8I4	Dynein light chain.	WD_REPEATS_REGION domain-containing protein.	0.743
B5M09_000893	H257_11203	W4HCB9	W4G4R3	Dynein light chain.	Uncharacterized protein.	0.771
B5M09_000893	H257_14049	W4HCB9	W4FSB3	Dynein light chain.	Dynein light chain roadblock.	0.846
B5M09_000893	H257_14408	W4HCB9	W4FTU7	Dynein light chain.	Uncharacterized protein.	0.657
B5M09_001181	B5M09_002619	W4HAA8	W4G038	Dynein light chain.	Uncharacterized protein.	0.685
B5M09_001181	B5M09_002802	W4HAA8	W4H2Y7	Dynein light chain.	Robl_LC7 domain-containing protein.	0.770
B5M09_001181	B5M09_010872	W4HAA8	W4FXR8	Dynein light chain.	Dynein light chain.	0.445
B5M09_001181	B5M09_012306	W4HAA8	W4H0S5	Dynein light chain.	Dynein light chain.	0.519
B5M09_001181	DYB25_003992	W4HAA8	W4H049	Dynein light chain.	Dynein light chain.	0.526
B5M09_001181	H257_02186	W4HAA8	W4H5E2	Dynein light chain.	WD_REPEATS_REGION domain-containing protein.	0.743