12 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	B5M09_002619	Uncharacterized protein. (126 aa)
	H257_06718	Uncharacterized protein. (129 aa)
	H257_05531	Uncharacterized protein. (121 aa)
	H257_04112	Dynein light chain roadblock. (101 aa)
	B5M09_002802	Robl_LC7 domain-containing protein. (125 aa)
	H257_06671	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (433 aa)
	H257_09544	Uncharacterized protein. (147 aa)
	H257_10037	Uncharacterized protein. (121 aa)
	H257_07090	Uncharacterized protein. (119 aa)
	H257_14049	Dynein light chain roadblock. (109 aa)
	H257_14408	Uncharacterized protein. (813 aa)
	H257_11203	Uncharacterized protein. (351 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_002619	B5M09_002802	W4G038	W4H2Y7	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.832
B5M09_002619	H257_04112	W4G038	W4GWS4	Uncharacterized protein.	Dynein light chain roadblock.	0.832
B5M09_002619	H257_05531	W4G038	W4GQJ2	Uncharacterized protein.	Uncharacterized protein.	0.657
B5M09_002619	H257_06718	W4G038	W4GM31	Uncharacterized protein.	Uncharacterized protein.	0.657
B5M09_002619	H257_07090	W4G038	W4GLG0	Uncharacterized protein.	Uncharacterized protein.	0.657
B5M09_002619	H257_10037	W4G038	W4G8N9	Uncharacterized protein.	Uncharacterized protein.	0.657
B5M09_002619	H257_11203	W4G038	W4G4R3	Uncharacterized protein.	Uncharacterized protein.	0.764
B5M09_002619	H257_14049	W4G038	W4FSB3	Uncharacterized protein.	Dynein light chain roadblock.	0.832
B5M09_002619	H257_14408	W4G038	W4FTU7	Uncharacterized protein.	Uncharacterized protein.	0.764
B5M09_002802	B5M09_002619	W4H2Y7	W4G038	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.832
B5M09_002802	H257_05531	W4H2Y7	W4GQJ2	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.793
B5M09_002802	H257_06671	W4H2Y7	W4GKZ1	Robl_LC7 domain-containing protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.851
B5M09_002802	H257_06718	W4H2Y7	W4GM31	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.793
B5M09_002802	H257_07090	W4H2Y7	W4GLG0	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.793
B5M09_002802	H257_09544	W4H2Y7	W4GA40	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.832
B5M09_002802	H257_10037	W4H2Y7	W4G8N9	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.793
B5M09_002802	H257_11203	W4H2Y7	W4G4R3	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.833
B5M09_002802	H257_14408	W4H2Y7	W4FTU7	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.833
H257_04112	B5M09_002619	W4GWS4	W4G038	Dynein light chain roadblock.	Uncharacterized protein.	0.832
H257_04112	H257_05531	W4GWS4	W4GQJ2	Dynein light chain roadblock.	Uncharacterized protein.	0.793