62 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H257_13688	Uncharacterized protein. (4371 aa)
	H257_10234	Uncharacterized protein. (4142 aa)
	H257_10751	NYD-SP28 domain-containing protein. (211 aa)
	H257_11203	Uncharacterized protein. (351 aa)
	H257_10752	NYD-SP28_assoc domain-containing protein. (465 aa)
	H257_11543	Uncharacterized protein. (4631 aa)
	B5M09_002619	Uncharacterized protein. (126 aa)
	H257_12686	Uncharacterized protein. (653 aa)
	B5M09_010872	Dynein light chain. (111 aa)
	H257_13888	Uncharacterized protein. (4216 aa)
	H257_13499	Uncharacterized protein. (4178 aa)
	H257_10308	CAP-Gly domain-containing protein. (1245 aa)
	H257_14408	Uncharacterized protein. (813 aa)
	H257_14049	Dynein light chain roadblock. (109 aa)
	H257_15640	Uncharacterized protein. (687 aa)
	H257_15615	Uncharacterized protein. (4145 aa)
	H257_16929	Uncharacterized protein. (3985 aa)
	H257_17685	Uncharacterized protein. (252 aa)
	H257_17312	Uncharacterized protein. (4609 aa)
	H257_18131	Uncharacterized protein. (4676 aa)
	H257_18512	MT domain-containing protein. (1435 aa)
	H257_17304	Uncharacterized protein. (558 aa)
	H257_00861	Uncharacterized protein. (4254 aa)
	B5M09_000893	Dynein light chain. (89 aa)
	H257_00389	Uncharacterized protein. (4250 aa)
	B5M09_007095	Uncharacterized protein. (4553 aa)
	B5M09_001181	Dynein light chain. (98 aa)
	H257_01548	Uncharacterized protein. (4583 aa)
	H257_00935	Dynein light chain. (116 aa)
	B5M09_005235	ANK_REP_REGION domain-containing protein. (599 aa)
	H257_01057	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family. (836 aa)
	H257_01799	Uncharacterized protein. (236 aa)
	H257_02186	WD_REPEATS_REGION domain-containing protein. (905 aa)
	B5M09_002802	Robl_LC7 domain-containing protein. (125 aa)
	H257_02603	Uncharacterized protein. (4098 aa)
	B5M09_000692	Uncharacterized protein. (422 aa)
	B5M09_012306	Dynein light chain. (96 aa)
	DYB25_003992	Dynein light chain. (103 aa)
	H257_04338	Uncharacterized protein. (4668 aa)
	H257_04112	Dynein light chain roadblock. (101 aa)
	H257_04029	Uncharacterized protein. (4673 aa)
	H257_04857	Uncharacterized protein. (241 aa)
	H257_04423	DHC_N1 domain-containing protein. (400 aa)
	H257_04334	Uncharacterized protein. (4068 aa)
	H257_04309	Uncharacterized protein. (4993 aa)
	H257_04687	Uncharacterized protein. (4563 aa)
	H257_05930	Uncharacterized protein. (881 aa)
	H257_05531	Uncharacterized protein. (121 aa)
	H257_06354	Uncharacterized protein. (383 aa)
	H257_06332	Uncharacterized protein. (4217 aa)
	H257_06589	Uncharacterized protein. (4159 aa)
	H257_06718	Uncharacterized protein. (129 aa)
	H257_07090	Uncharacterized protein. (119 aa)
	H257_06671	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes. (433 aa)
	H257_07663	Uncharacterized protein. (224 aa)
	H257_07914	WD_REPEATS_REGION domain-containing protein. (955 aa)
	B5M09_011430	Dynein light chain. (103 aa)
	H257_09144	Dynein light chain. (92 aa)
	H257_09544	Uncharacterized protein. (147 aa)
	H257_10154	Uncharacterized protein. (4182 aa)
	H257_10037	Uncharacterized protein. (121 aa)
	H257_10218	WD_REPEATS_REGION domain-containing protein. (586 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_000692	B5M09_000893	W4H1J0	W4HCB9	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	B5M09_001181	W4H1J0	W4HAA8	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	B5M09_002619	W4H1J0	W4G038	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_000692	B5M09_002802	W4H1J0	W4H2Y7	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.617
B5M09_000692	B5M09_010872	W4H1J0	W4FXR8	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	B5M09_011430	W4H1J0	W4GD70	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	B5M09_012306	W4H1J0	W4H0S5	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	DYB25_003992	W4H1J0	W4H049	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	H257_00935	W4H1J0	W4H7N5	Uncharacterized protein.	Dynein light chain.	0.549
B5M09_000692	H257_01057	W4H1J0	W4H6I6	Uncharacterized protein.	Urease; In the C-terminal section; belongs to the metallo-dependent hydrolases superfamily. Urease alpha subunit family.	0.549
B5M09_000692	H257_02186	W4H1J0	W4H5E2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629
B5M09_000692	H257_04112	W4H1J0	W4GWS4	Uncharacterized protein.	Dynein light chain roadblock.	0.617
B5M09_000692	H257_05531	W4H1J0	W4GQJ2	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_05930	W4H1J0	W4GR83	Uncharacterized protein.	Uncharacterized protein.	0.629
B5M09_000692	H257_06354	W4H1J0	W4GPU9	Uncharacterized protein.	Uncharacterized protein.	0.746
B5M09_000692	H257_06671	W4H1J0	W4GKZ1	Uncharacterized protein.	Dynein light intermediate chain; Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. May play a role in binding dynein to membranous organelles or chromosomes.	0.700
B5M09_000692	H257_06718	W4H1J0	W4GM31	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_07090	W4H1J0	W4GLG0	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_07663	W4H1J0	W4GHR0	Uncharacterized protein.	Uncharacterized protein.	0.549
B5M09_000692	H257_07914	W4H1J0	W4GH00	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629