37 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H257_04029	Uncharacterized protein. (4673 aa)
	H257_00861	Uncharacterized protein. (4254 aa)
	H257_00389	Uncharacterized protein. (4250 aa)
	B5M09_007095	Uncharacterized protein. (4553 aa)
	H257_01548	Uncharacterized protein. (4583 aa)
	B5M09_005235	ANK_REP_REGION domain-containing protein. (599 aa)
	B5M09_002802	Robl_LC7 domain-containing protein. (125 aa)
	H257_02603	Uncharacterized protein. (4098 aa)
	B5M09_000692	Uncharacterized protein. (422 aa)
	H257_04338	Uncharacterized protein. (4668 aa)
	H257_04112	Dynein light chain roadblock. (101 aa)
	H257_04423	DHC_N1 domain-containing protein. (400 aa)
	H257_04334	Uncharacterized protein. (4068 aa)
	H257_04309	Uncharacterized protein. (4993 aa)
	H257_04687	Uncharacterized protein. (4563 aa)
	H257_05531	Uncharacterized protein. (121 aa)
	H257_06332	Uncharacterized protein. (4217 aa)
	H257_06589	Uncharacterized protein. (4159 aa)
	H257_06718	Uncharacterized protein. (129 aa)
	H257_07090	Uncharacterized protein. (119 aa)
	H257_09544	Uncharacterized protein. (147 aa)
	H257_10154	Uncharacterized protein. (4182 aa)
	H257_10037	Uncharacterized protein. (121 aa)
	H257_10234	Uncharacterized protein. (4142 aa)
	H257_11543	Uncharacterized protein. (4631 aa)
	B5M09_002619	Uncharacterized protein. (126 aa)
	H257_13888	Uncharacterized protein. (4216 aa)
	H257_13514	Uncharacterized protein. (832 aa)
	H257_13499	Uncharacterized protein. (4178 aa)
	H257_13688	Uncharacterized protein. (4371 aa)
	H257_14049	Dynein light chain roadblock. (109 aa)
	H257_15615	Uncharacterized protein. (4145 aa)
	H257_16929	Uncharacterized protein. (3985 aa)
	H257_17312	Uncharacterized protein. (4609 aa)
	H257_17960	Uncharacterized protein. (810 aa)
	H257_18512	MT domain-containing protein. (1435 aa)
	H257_18131	Uncharacterized protein. (4676 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_000692	B5M09_002619	W4H1J0	W4G038	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_000692	B5M09_002802	W4H1J0	W4H2Y7	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.617
B5M09_000692	H257_04112	W4H1J0	W4GWS4	Uncharacterized protein.	Dynein light chain roadblock.	0.617
B5M09_000692	H257_05531	W4H1J0	W4GQJ2	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_06718	W4H1J0	W4GM31	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_07090	W4H1J0	W4GLG0	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_09544	W4H1J0	W4GA40	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_000692	H257_10037	W4H1J0	W4G8N9	Uncharacterized protein.	Uncharacterized protein.	0.588
B5M09_000692	H257_14049	W4H1J0	W4FSB3	Uncharacterized protein.	Dynein light chain roadblock.	0.617
B5M09_002619	B5M09_000692	W4G038	W4H1J0	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	B5M09_002802	W4G038	W4H2Y7	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.832
B5M09_002619	B5M09_005235	W4G038	W4H7B1	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.592
B5M09_002619	B5M09_007095	W4G038	W4HAF3	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	H257_00389	W4G038	W4HAH8	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	H257_00861	W4G038	W4HED7	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	H257_01548	W4G038	W4H9L1	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	H257_02603	W4G038	W4H2B9	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	H257_04029	W4G038	W4GWG9	Uncharacterized protein.	Uncharacterized protein.	0.592
B5M09_002619	H257_04112	W4G038	W4GWS4	Uncharacterized protein.	Dynein light chain roadblock.	0.832
B5M09_002619	H257_04309	W4G038	W4GVD1	Uncharacterized protein.	Uncharacterized protein.	0.592