26 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H257_17304	Uncharacterized protein. (558 aa)
	H257_17344	WD_REPEATS_REGION domain-containing protein. (1787 aa)
	H257_16237	Uncharacterized protein. (321 aa)
	H257_15367	Uncharacterized protein. (1820 aa)
	H257_15640	Uncharacterized protein. (687 aa)
	H257_12686	Uncharacterized protein. (653 aa)
	H257_10218	WD_REPEATS_REGION domain-containing protein. (586 aa)
	H257_08988	Uncharacterized protein. (302 aa)
	H257_08328	Uncharacterized protein. (222 aa)
	H257_07914	WD_REPEATS_REGION domain-containing protein. (955 aa)
	H257_06776	Uncharacterized protein. (1426 aa)
	H257_06458	DUF4200 domain-containing protein. (350 aa)
	H257_06355	Uncharacterized protein. (419 aa)
	H257_05930	Uncharacterized protein. (881 aa)
	H257_05350	Casc1_N domain-containing protein. (669 aa)
	H257_05604	Uncharacterized protein. (297 aa)
	H257_04029	Uncharacterized protein. (4673 aa)
	H257_02570	Uncharacterized protein. (444 aa)
	H257_02699	Uncharacterized protein. (247 aa)
	H257_02186	WD_REPEATS_REGION domain-containing protein. (905 aa)
	H257_02763	Uncharacterized protein. (649 aa)
	H257_01548	Uncharacterized protein. (4583 aa)
	B5M09_007095	Uncharacterized protein. (4553 aa)
	H257_00861	Uncharacterized protein. (4254 aa)
	H257_18131	Uncharacterized protein. (4676 aa)
	H257_16959	Uncharacterized protein. (309 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_007095	H257_02186	W4HAF3	W4H5E2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629
B5M09_007095	H257_05930	W4HAF3	W4GR83	Uncharacterized protein.	Uncharacterized protein.	0.629
B5M09_007095	H257_07914	W4HAF3	W4GH00	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.728
B5M09_007095	H257_10218	W4HAF3	W4G8I4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.755
B5M09_007095	H257_12686	W4HAF3	W4FYZ5	Uncharacterized protein.	Uncharacterized protein.	0.629
B5M09_007095	H257_15640	W4HAF3	W4FNR0	Uncharacterized protein.	Uncharacterized protein.	0.786
B5M09_007095	H257_17304	W4HAF3	W4FF73	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_00861	H257_02186	W4HED7	W4H5E2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629
H257_00861	H257_05930	W4HED7	W4GR83	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_00861	H257_07914	W4HED7	W4GH00	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629
H257_00861	H257_10218	W4HED7	W4G8I4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629
H257_00861	H257_12686	W4HED7	W4FYZ5	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_00861	H257_15640	W4HED7	W4FNR0	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_00861	H257_17304	W4HED7	W4FF73	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_01548	H257_02186	W4H9L1	W4H5E2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.629
H257_01548	H257_05930	W4H9L1	W4GR83	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_01548	H257_07914	W4H9L1	W4GH00	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.749
H257_01548	H257_10218	W4H9L1	W4G8I4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.720
H257_01548	H257_12686	W4H9L1	W4FYZ5	Uncharacterized protein.	Uncharacterized protein.	0.629
H257_01548	H257_15640	W4H9L1	W4FNR0	Uncharacterized protein.	Uncharacterized protein.	0.795