25 items (Aphanomyces astaci) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	H257_16644	Uncharacterized protein. (861 aa)
	H257_00808	WD_REPEATS_REGION domain-containing protein. (1198 aa)
	H257_00692	Uncharacterized protein. (412 aa)
	H257_01197	IFT81_CH domain-containing protein. (684 aa)
	H257_01940	Uncharacterized protein. (1790 aa)
	H257_02763	Uncharacterized protein. (649 aa)
	B5M09_002802	Robl_LC7 domain-containing protein. (125 aa)
	H257_02640	WD_REPEATS_REGION domain-containing protein. (765 aa)
	H257_03608	Uncharacterized protein. (648 aa)
	H257_04112	Dynein light chain roadblock. (101 aa)
	H257_06288	Uncharacterized protein. (1404 aa)
	DYB25_007440	Uncharacterized protein. (553 aa)
	H257_09181	Uncharacterized protein. (178 aa)
	H257_09544	Uncharacterized protein. (147 aa)
	H257_10969	WD_REPEATS_REGION domain-containing protein. (1233 aa)
	H257_11203	Uncharacterized protein. (351 aa)
	H257_12238	Uncharacterized protein. (454 aa)
	H257_11768	Uncharacterized protein. (710 aa)
	B5M09_002619	Uncharacterized protein. (126 aa)
	H257_14408	Uncharacterized protein. (813 aa)
	H257_14049	Dynein light chain roadblock. (109 aa)
	B5M09_007602	Uncharacterized protein. (489 aa)
	H257_15116	Uncharacterized protein. (577 aa)
	H257_17586	Uncharacterized protein. (442 aa)
	H257_18522	Uncharacterized protein. (1441 aa)

Your Current Organism:

Aphanomyces astaci

NCBI taxonomy Id: 112090
Other names: A. astaci

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B5M09_002619	B5M09_002802	W4G038	W4H2Y7	Uncharacterized protein.	Robl_LC7 domain-containing protein.	0.832
B5M09_002619	B5M09_007602	W4G038	W4FS57	Uncharacterized protein.	Uncharacterized protein.	0.671
B5M09_002619	H257_00692	W4G038	W4HCS8	Uncharacterized protein.	Uncharacterized protein.	0.630
B5M09_002619	H257_00808	W4G038	W4HDE1	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.603
B5M09_002619	H257_01197	W4G038	W4H9D4	Uncharacterized protein.	IFT81_CH domain-containing protein.	0.636
B5M09_002619	H257_01940	W4G038	W4H714	Uncharacterized protein.	Uncharacterized protein.	0.644
B5M09_002619	H257_02640	W4G038	W4H2F9	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.640
B5M09_002619	H257_04112	W4G038	W4GWS4	Uncharacterized protein.	Dynein light chain roadblock.	0.832
B5M09_002619	H257_06288	W4G038	W4GMC3	Uncharacterized protein.	Uncharacterized protein.	0.598
B5M09_002619	H257_10969	W4G038	W4G5P7	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.615
B5M09_002619	H257_11203	W4G038	W4G4R3	Uncharacterized protein.	Uncharacterized protein.	0.764
B5M09_002619	H257_14049	W4G038	W4FSB3	Uncharacterized protein.	Dynein light chain roadblock.	0.832
B5M09_002619	H257_14408	W4G038	W4FTU7	Uncharacterized protein.	Uncharacterized protein.	0.764
B5M09_002619	H257_16644	W4G038	W4FHX8	Uncharacterized protein.	Uncharacterized protein.	0.640
B5M09_002619	H257_17586	W4G038	W4FFV6	Uncharacterized protein.	Uncharacterized protein.	0.598
B5M09_002619	H257_18522	W4G038	W4FD39	Uncharacterized protein.	Uncharacterized protein.	0.616
B5M09_002802	B5M09_002619	W4H2Y7	W4G038	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.832
B5M09_002802	H257_00692	W4H2Y7	W4HCS8	Robl_LC7 domain-containing protein.	Uncharacterized protein.	0.606
B5M09_002802	H257_01197	W4H2Y7	W4H9D4	Robl_LC7 domain-containing protein.	IFT81_CH domain-containing protein.	0.595
B5M09_002802	H257_02640	W4H2Y7	W4H2F9	Robl_LC7 domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.583