(14 nodes) Mixed, incl. Queuosine biosynthesis, and Thiamine metabolism network (Arenibacter certesii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000429545_01112	Unannotated protein. (307 aa)
	GCA_000429545_01360	Unannotated protein. (521 aa)
	GCA_000429545_01380	Unannotated protein. (338 aa)
	GCA_000429545_01831	Unannotated protein. (736 aa)
	GCA_000429545_02184	Unannotated protein. (542 aa)
	GCA_000429545_02378	Unannotated protein. (347 aa)
	GCA_000429545_02580	Unannotated protein. (317 aa)
	GCA_000429545_02581	Unannotated protein. (150 aa)
	GCA_000429545_02582	Unannotated protein. (108 aa)
	GCA_000429545_02584	Unannotated protein. (349 aa)
	GCA_000429545_02585	Unannotated protein. (361 aa)
	GCA_000429545_03212	Unannotated protein. (221 aa)
	GCA_000429545_03310	Unannotated protein. (433 aa)
	GCA_000429545_03335	Unannotated protein. (376 aa)

Your Current Organism:

Arenibacter certesii

NCBI taxonomy Id: 1121011
Other names: A. certesii DSM 19833, Arenibacter certesii DSM 19833

Send network to Cytoscape

Export your current network:

... as a bitmap image:

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file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000429545_01112	GCA_000429545_02584	Unannotated protein.	Unannotated protein.	0.713
GCA_000429545_01360	GCA_000429545_01380	Unannotated protein.	Unannotated protein.	0.552
GCA_000429545_01380	GCA_000429545_01360	Unannotated protein.	Unannotated protein.	0.552
GCA_000429545_02378	GCA_000429545_02580	Unannotated protein.	Unannotated protein.	0.875
GCA_000429545_02378	GCA_000429545_03212	Unannotated protein.	Unannotated protein.	0.946
GCA_000429545_02580	GCA_000429545_02378	Unannotated protein.	Unannotated protein.	0.875
GCA_000429545_02580	GCA_000429545_02581	Unannotated protein.	Unannotated protein.	0.860
GCA_000429545_02580	GCA_000429545_02582	Unannotated protein.	Unannotated protein.	0.684
GCA_000429545_02580	GCA_000429545_02585	Unannotated protein.	Unannotated protein.	0.454
GCA_000429545_02580	GCA_000429545_03212	Unannotated protein.	Unannotated protein.	0.875
GCA_000429545_02581	GCA_000429545_02580	Unannotated protein.	Unannotated protein.	0.860
GCA_000429545_02581	GCA_000429545_02582	Unannotated protein.	Unannotated protein.	0.690
GCA_000429545_02581	GCA_000429545_02584	Unannotated protein.	Unannotated protein.	0.417
GCA_000429545_02582	GCA_000429545_02580	Unannotated protein.	Unannotated protein.	0.684
GCA_000429545_02582	GCA_000429545_02581	Unannotated protein.	Unannotated protein.	0.690
GCA_000429545_02582	GCA_000429545_02584	Unannotated protein.	Unannotated protein.	0.498
GCA_000429545_02584	GCA_000429545_01112	Unannotated protein.	Unannotated protein.	0.713
GCA_000429545_02584	GCA_000429545_02581	Unannotated protein.	Unannotated protein.	0.417
GCA_000429545_02584	GCA_000429545_02582	Unannotated protein.	Unannotated protein.	0.498
GCA_000429545_02584	GCA_000429545_02585	Unannotated protein.	Unannotated protein.	0.799