(11 nodes) Mixed, incl. Secretion by the type IV secretion system, and Cell outer membrane network (Campylobacter cuniculorum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	CCUN_1552	Type IV secretion system, coupling protein VirD4. (610 aa)
	CCUN_1553	Uncharacterized protein. (128 aa)
	CCUN_1554	Type IV secretion system protein VirB11. (316 aa)
	CCUN_1555	Uncharacterized protein. (77 aa)
	CCUN_1556	Uncharacterized protein. (70 aa)
	CCUN_1557	Type IV secretion system, translocation pore protein VirB10. (371 aa)
	CCUN_1558	Type IV secretion system, translocation pore protein VirB9. (358 aa)
	CCUN_1559	Type IV secretion system protein VirB8. (217 aa)
	CCUN_1560	Type IV secretion system, conjugal transfer ATPase, VirB4 family. (856 aa)
	CCUN_1561	Uncharacterized protein. (80 aa)
	CCUN_1562	Uncharacterized protein. (100 aa)

Your Current Organism:

Campylobacter cuniculorum

NCBI taxonomy Id: 1121267
Other names: C. cuniculorum DSM 23162 = LMG 24588, Campylobacter cuniculorum 150B, Campylobacter cuniculorum DSM 23162, Campylobacter cuniculorum DSM 23162 = LMG 24588, Campylobacter cuniculorum LMG 24588, Campylobacter cuniculorum LMG 24588 = DSM 23162, Campylobacter sp. 150B

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
CCUN_1552	CCUN_1553	Type IV secretion system, coupling protein VirD4.	Uncharacterized protein.	0.794
CCUN_1552	CCUN_1554	Type IV secretion system, coupling protein VirD4.	Type IV secretion system protein VirB11.	0.930
CCUN_1552	CCUN_1555	Type IV secretion system, coupling protein VirD4.	Uncharacterized protein.	0.773
CCUN_1552	CCUN_1556	Type IV secretion system, coupling protein VirD4.	Uncharacterized protein.	0.773
CCUN_1552	CCUN_1557	Type IV secretion system, coupling protein VirD4.	Type IV secretion system, translocation pore protein VirB10.	0.975
CCUN_1552	CCUN_1558	Type IV secretion system, coupling protein VirD4.	Type IV secretion system, translocation pore protein VirB9.	0.946
CCUN_1552	CCUN_1559	Type IV secretion system, coupling protein VirD4.	Type IV secretion system protein VirB8.	0.925
CCUN_1552	CCUN_1560	Type IV secretion system, coupling protein VirD4.	Type IV secretion system, conjugal transfer ATPase, VirB4 family.	0.923
CCUN_1552	CCUN_1561	Type IV secretion system, coupling protein VirD4.	Uncharacterized protein.	0.516
CCUN_1552	CCUN_1562	Type IV secretion system, coupling protein VirD4.	Uncharacterized protein.	0.494
CCUN_1553	CCUN_1552	Uncharacterized protein.	Type IV secretion system, coupling protein VirD4.	0.794
CCUN_1553	CCUN_1554	Uncharacterized protein.	Type IV secretion system protein VirB11.	0.794
CCUN_1553	CCUN_1555	Uncharacterized protein.	Uncharacterized protein.	0.773
CCUN_1553	CCUN_1556	Uncharacterized protein.	Uncharacterized protein.	0.773
CCUN_1553	CCUN_1557	Uncharacterized protein.	Type IV secretion system, translocation pore protein VirB10.	0.794
CCUN_1553	CCUN_1558	Uncharacterized protein.	Type IV secretion system, translocation pore protein VirB9.	0.784
CCUN_1553	CCUN_1559	Uncharacterized protein.	Type IV secretion system protein VirB8.	0.784
CCUN_1553	CCUN_1560	Uncharacterized protein.	Type IV secretion system, conjugal transfer ATPase, VirB4 family.	0.522
CCUN_1553	CCUN_1561	Uncharacterized protein.	Uncharacterized protein.	0.506
CCUN_1553	CCUN_1562	Uncharacterized protein.	Uncharacterized protein.	0.494

page 1 of 6

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Textmining

Coexpression

Databases

Fusion

© STRING Consortium 2025

Credits

Access

Info

About