STRINGSTRING
rsmA rsmA SHI54929.1 SHI54929.1 SHI55598.1 SHI55598.1 SHI61137.1 SHI61137.1 metK metK SHI83480.1 SHI83480.1 mtnA mtnA SHJ08254.1 SHJ08254.1 SHJ08605.1 SHJ08605.1 SHJ15362.1 SHJ15362.1 SHJ25700.1 SHJ25700.1 SHJ41774.1 SHJ41774.1 SHJ42921.1 SHJ42921.1 SHJ58038.1 SHJ58038.1 SHJ58087.1 SHJ58087.1 SHJ65796.1 SHJ65796.1 SHJ66555.1 SHJ66555.1 SHJ66597.1 SHJ66597.1 SHJ66709.1 SHJ66709.1 SHJ68465.1 SHJ68465.1 asd asd SHJ73655.1 SHJ73655.1 SHJ73942.1 SHJ73942.1 SHJ75589.1 SHJ75589.1 SHJ85776.1 SHJ85776.1 SHJ90366.1 SHJ90366.1 vapC vapC SHJ97886.1 SHJ97886.1 SHK02556.1 SHK02556.1 SHK06455.1 SHK06455.1 SHK10680.1 SHK10680.1 SHK10834.1 SHK10834.1 SHK15292.1 SHK15292.1 SHK21795.1 SHK21795.1 SHK32692.1 SHK32692.1 SHK32966.1 SHK32966.1 SHK33656.1 SHK33656.1 SHK37213.1 SHK37213.1 speE speE SHK51226.1 SHK51226.1 SHK55464.1 SHK55464.1 SHK60122.1 SHK60122.1 serC serC SHK70007.1 SHK70007.1 SHK70336.1 SHK70336.1 SHK71800.1 SHK71800.1 SHK77743.1 SHK77743.1 SHK83817.1 SHK83817.1 mdh mdh ahcY ahcY metK-2 metK-2 SHK92537.1 SHK92537.1 SHK95659.1 SHK95659.1 SHL00093.1 SHL00093.1 SHL00887.1 SHL00887.1 SHL07878.1 SHL07878.1 SHL09797.1 SHL09797.1 SHL13625.1 SHL13625.1 SHL17157.1 SHL17157.1 SHL22746.1 SHL22746.1 SHL23117.1 SHL23117.1 SHL32528.1 SHL32528.1 metK-3 metK-3 vapC-2 vapC-2 SHL53615.1 SHL53615.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
rsmA16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. (289 aa)
SHI54929.1Methionine synthase II (cobalamin-independent). (361 aa)
SHI55598.1Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. (358 aa)
SHI61137.1Spermine/spermidine synthase. (868 aa)
metKMethionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (389 aa)
SHI83480.1DNA (cytosine-5)-methyltransferase 1; Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family. (383 aa)
mtnAMethylthioribose-1-phosphate isomerase; Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P). (369 aa)
SHJ08254.1HDIG domain-containing protein. (530 aa)
SHJ08605.1Methyltransferase, MtaA/CmuA family; Belongs to the uroporphyrinogen decarboxylase family. (545 aa)
SHJ15362.1Hypothetical protein. (161 aa)
SHJ25700.1Hypothetical protein. (744 aa)
SHJ41774.1Ribosomal protein S6--L-glutamate ligase. (276 aa)
SHJ42921.1Ankyrin repeat. (219 aa)
SHJ58038.1Hypothetical protein. (939 aa)
SHJ58087.1Hypothetical protein. (1047 aa)
SHJ65796.1Ribosomal protein S6--L-glutamate ligase. (276 aa)
SHJ66555.1Cysteine synthase. (307 aa)
SHJ66597.1Serine O-acetyltransferase. (315 aa)
SHJ66709.1Helix-turn-helix. (138 aa)
SHJ68465.1Hypothetical protein. (341 aa)
asdAspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family. (373 aa)
SHJ73655.1Uncharacterized conserved protein, DUF39 family. (387 aa)
SHJ73942.1Methyltransferase, MtaA/CmuA family; Belongs to the uroporphyrinogen decarboxylase family. (548 aa)
SHJ75589.1S-adenosylmethionine decarboxylase. (211 aa)
SHJ85776.1Vitamin B12 dependent methionine synthase, activation domain. (225 aa)
SHJ90366.1Hypothetical protein. (305 aa)
vapCtRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (134 aa)
SHJ97886.1Spermine/spermidine synthase. (250 aa)
SHK02556.1Hypothetical protein. (154 aa)
SHK06455.1Aspartate aminotransferase. (393 aa)
SHK10680.1Diguanylate cyclase (GGDEF) domain-containing protein. (607 aa)
SHK10834.1Aspartate kinase. (472 aa)
SHK15292.12-hydroxy-3-keto-5-methylthiopentenyl-1- phosphatephosphatase. (214 aa)
SHK21795.1Aminotransferase class I and II. (371 aa)
SHK32692.1Cystathione beta-lyase. (390 aa)
SHK32966.1Chalcone isomerase-like. (196 aa)
SHK33656.1L-cysteine desulfidase; Belongs to the UPF0597 family. (439 aa)
SHK37213.1D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (326 aa)
speESpermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine. (542 aa)
SHK51226.1Branched chain amino acid aminotransferase apoenzyme. (354 aa)
SHK55464.1D-cysteine desulfhydrase. (359 aa)
SHK60122.1Ankyrin repeat. (275 aa)
serCPhosphoserine aminotransferase apoenzyme; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. (361 aa)
SHK70007.1D-3-phosphoglycerate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (526 aa)
SHK70336.1Aspartate aminotransferase. (423 aa)
SHK71800.1Aspartate kinase; Belongs to the aspartokinase family. (405 aa)
SHK77743.1Homoserine dehydrogenase. (442 aa)
SHK83817.1Cystathionine beta-lyase. (375 aa)
mdhMalate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. (309 aa)
ahcYAdenosylhomocysteinase; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. (469 aa)
metK-2Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (393 aa)
SHK92537.14Fe-4S dicluster domain-containing protein. (147 aa)
SHK95659.1Chalcone isomerase-like. (190 aa)
SHL00093.1Hypothetical protein. (161 aa)
SHL00887.1Spermidine synthase. (708 aa)
SHL07878.1Vitamin B12 dependent methionine synthase, activation domain. (233 aa)
SHL09797.1Protein of unknown function. (343 aa)
SHL13625.1GAF domain-containing protein. (505 aa)
SHL17157.1Branched-chain amino acid aminotransferase. (288 aa)
SHL22746.1Rhodanese-related sulfurtransferase. (176 aa)
SHL23117.1Ribosomal protein S6--L-glutamate ligase. (258 aa)
SHL32528.1Rhodanese-related sulfurtransferase. (251 aa)
metK-3Methionine adenosyltransferase; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. (399 aa)
vapC-2tRNA(fMet)-specific endonuclease VapC; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family. (134 aa)
SHL53615.1Protein of unknown function. (485 aa)
Your Current Organism:
Desulfatibacillum alkenivorans DSM 16219
NCBI taxonomy Id: 1121393
Other names: D. alkenivorans DSM 16219
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