(71 nodes) O-Antigen nucleotide sugar biosynthesis, and Polysaccharide biosynthetic process network (Dyadobacter alkalitolerans)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000428845_00299	Unannotated protein. (339 aa)
	GCA_000428845_00300	Unannotated protein. (351 aa)
	GCA_000428845_00301	Unannotated protein. (263 aa)
	GCA_000428845_00354	Unannotated protein. (372 aa)
	GCA_000428845_00366	Unannotated protein. (181 aa)
	GCA_000428845_00401	Unannotated protein. (330 aa)
	GCA_000428845_00402	Unannotated protein. (438 aa)
	GCA_000428845_00596	Unannotated protein. (403 aa)
	GCA_000428845_00605	Unannotated protein. (302 aa)
	GCA_000428845_01509	Unannotated protein. (370 aa)
	GCA_000428845_02440	Unannotated protein. (390 aa)
	GCA_000428845_02441	Unannotated protein. (302 aa)
	GCA_000428845_02446	Unannotated protein. (401 aa)
	GCA_000428845_02447	Unannotated protein. (271 aa)
	GCA_000428845_02448	Unannotated protein. (450 aa)
	GCA_000428845_02449	Unannotated protein. (318 aa)
	GCA_000428845_02451	Unannotated protein. (287 aa)
	GCA_000428845_02452	Unannotated protein. (446 aa)
	GCA_000428845_02455	Unannotated protein. (391 aa)
	GCA_000428845_02456	Unannotated protein. (499 aa)
	GCA_000428845_02458	Unannotated protein. (393 aa)
	GCA_000428845_02459	Unannotated protein. (726 aa)
	GCA_000428845_02460	Unannotated protein. (222 aa)
	GCA_000428845_02461	Unannotated protein. (205 aa)
	GCA_000428845_02462	Unannotated protein. (405 aa)
	GCA_000428845_02716	Unannotated protein. (333 aa)
	GCA_000428845_02717	Unannotated protein. (388 aa)
	GCA_000428845_02718	Unannotated protein. (330 aa)
	GCA_000428845_02719	Unannotated protein. (421 aa)
	GCA_000428845_02753	Unannotated protein. (296 aa)
	GCA_000428845_02913	Unannotated protein. (268 aa)
	GCA_000428845_02914	Unannotated protein. (300 aa)
	GCA_000428845_02915	Unannotated protein. (204 aa)
	GCA_000428845_02916	Unannotated protein. (506 aa)
	GCA_000428845_02917	Unannotated protein. (377 aa)
	GCA_000428845_03046	Unannotated protein. (378 aa)
	GCA_000428845_03486	Unannotated protein. (353 aa)
	GCA_000428845_03933	Unannotated protein. (286 aa)
	GCA_000428845_03956	Unannotated protein. (364 aa)
	GCA_000428845_03983	Unannotated protein. (279 aa)
	GCA_000428845_03984	Unannotated protein. (776 aa)
	GCA_000428845_04366	Unannotated protein. (776 aa)
	GCA_000428845_04367	Unannotated protein. (367 aa)
	GCA_000428845_04478	Unannotated protein. (357 aa)
	GCA_000428845_04550	Unannotated protein. (221 aa)
	GCA_000428845_04768	Unannotated protein. (783 aa)
	GCA_000428845_04769	Unannotated protein. (455 aa)
	GCA_000428845_04770	Unannotated protein. (311 aa)
	GCA_000428845_04776	Unannotated protein. (271 aa)
	GCA_000428845_04777	Unannotated protein. (785 aa)
	GCA_000428845_05111	Unannotated protein. (423 aa)
	GCA_000428845_05141	Unannotated protein. (245 aa)
	GCA_000428845_05142	Unannotated protein. (275 aa)
	GCA_000428845_05143	Unannotated protein. (791 aa)
	GCA_000428845_05144	Unannotated protein. (39 aa)
	GCA_000428845_05145	Unannotated protein. (437 aa)
	GCA_000428845_05146	Unannotated protein. (484 aa)
	GCA_000428845_05147	Unannotated protein. (305 aa)
	GCA_000428845_05148	Unannotated protein. (236 aa)
	GCA_000428845_05149	Unannotated protein. (237 aa)
	GCA_000428845_05150	Unannotated protein. (374 aa)
	GCA_000428845_05151	Unannotated protein. (366 aa)
	GCA_000428845_05152	Unannotated protein. (386 aa)
	GCA_000428845_05153	Unannotated protein. (179 aa)
	GCA_000428845_05154	Unannotated protein. (351 aa)
	GCA_000428845_05156	Unannotated protein. (286 aa)
	GCA_000428845_05157	Unannotated protein. (455 aa)
	GCA_000428845_05158	Unannotated protein. (287 aa)
	GCA_000428845_05189	Unannotated protein. (313 aa)
	GCA_000428845_05268	Unannotated protein. (134 aa)
	GCA_000428845_05446	Unannotated protein. (410 aa)

Your Current Organism:

Dyadobacter alkalitolerans

NCBI taxonomy Id: 1121481
Other names: D. alkalitolerans DSM 23607, Dyadobacter alkalitolerans DSM 23607

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000428845_00299	GCA_000428845_00300	Unannotated protein.	Unannotated protein.	0.925
GCA_000428845_00299	GCA_000428845_00301	Unannotated protein.	Unannotated protein.	0.771
GCA_000428845_00299	GCA_000428845_00366	Unannotated protein.	Unannotated protein.	0.561
GCA_000428845_00299	GCA_000428845_00401	Unannotated protein.	Unannotated protein.	0.789
GCA_000428845_00299	GCA_000428845_00402	Unannotated protein.	Unannotated protein.	0.922
GCA_000428845_00299	GCA_000428845_00605	Unannotated protein.	Unannotated protein.	0.548
GCA_000428845_00299	GCA_000428845_01509	Unannotated protein.	Unannotated protein.	0.487
GCA_000428845_00299	GCA_000428845_02462	Unannotated protein.	Unannotated protein.	0.438
GCA_000428845_00299	GCA_000428845_02716	Unannotated protein.	Unannotated protein.	0.477
GCA_000428845_00299	GCA_000428845_02718	Unannotated protein.	Unannotated protein.	0.736
GCA_000428845_00299	GCA_000428845_02719	Unannotated protein.	Unannotated protein.	0.522
GCA_000428845_00299	GCA_000428845_02753	Unannotated protein.	Unannotated protein.	0.931
GCA_000428845_00299	GCA_000428845_03933	Unannotated protein.	Unannotated protein.	0.831
GCA_000428845_00299	GCA_000428845_03956	Unannotated protein.	Unannotated protein.	0.462
GCA_000428845_00299	GCA_000428845_04367	Unannotated protein.	Unannotated protein.	0.954
GCA_000428845_00299	GCA_000428845_04550	Unannotated protein.	Unannotated protein.	0.584
GCA_000428845_00299	GCA_000428845_04769	Unannotated protein.	Unannotated protein.	0.620
GCA_000428845_00299	GCA_000428845_05153	Unannotated protein.	Unannotated protein.	0.561
GCA_000428845_00299	GCA_000428845_05154	Unannotated protein.	Unannotated protein.	0.683
GCA_000428845_00299	GCA_000428845_05156	Unannotated protein.	Unannotated protein.	0.574