(40 nodes) Protein histidine kinase activity, and Putative diguanylate phosphodiesterase network (Enterovibrio calviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000621165_00239	Unannotated protein. (571 aa)
	GCA_000621165_00296	Unannotated protein. (1247 aa)
	GCA_000621165_00310	Unannotated protein. (1001 aa)
	GCA_000621165_00352	Unannotated protein. (689 aa)
	GCA_000621165_00372	Unannotated protein. (773 aa)
	GCA_000621165_00398	Unannotated protein. (1319 aa)
	GCA_000621165_00416	Unannotated protein. (897 aa)
	GCA_000621165_00417	Unannotated protein. (583 aa)
	GCA_000621165_00458	Unannotated protein. (1007 aa)
	GCA_000621165_00464	Unannotated protein. (607 aa)
	GCA_000621165_00686	Unannotated protein. (1350 aa)
	GCA_000621165_00929	Unannotated protein. (1113 aa)
	GCA_000621165_01369	Unannotated protein. (354 aa)
	GCA_000621165_01576	Unannotated protein. (539 aa)
	GCA_000621165_01747	Unannotated protein. (327 aa)
	GCA_000621165_01864	Unannotated protein. (511 aa)
	GCA_000621165_01891	Unannotated protein. (695 aa)
	GCA_000621165_01968	Unannotated protein. (1094 aa)
	GCA_000621165_02069	Unannotated protein. (973 aa)
	GCA_000621165_02178	Unannotated protein. (512 aa)
	GCA_000621165_02344	Unannotated protein. (540 aa)
	GCA_000621165_02680	Unannotated protein. (829 aa)
	GCA_000621165_02823	Unannotated protein. (914 aa)
	GCA_000621165_03031	Unannotated protein. (650 aa)
	GCA_000621165_03381	Unannotated protein. (878 aa)
	GCA_000621165_03618	Unannotated protein. (976 aa)
	GCA_000621165_03939	Unannotated protein. (1056 aa)
	GCA_000621165_03977	Unannotated protein. (655 aa)
	GCA_000621165_03982	Unannotated protein. (682 aa)
	GCA_000621165_04055	Unannotated protein. (781 aa)
	GCA_000621165_04056	Unannotated protein. (582 aa)
	GCA_000621165_04077	Unannotated protein. (1125 aa)
	GCA_000621165_04174	Unannotated protein. (316 aa)
	GCA_000621165_04209	Unannotated protein. (737 aa)
	GCA_000621165_04274	Unannotated protein. (408 aa)
	GCA_000621165_04450	Unannotated protein. (1052 aa)
	GCA_000621165_04751	Unannotated protein. (401 aa)
	GCA_000621165_04765	Unannotated protein. (973 aa)
	GCA_000621165_04846	Unannotated protein. (853 aa)
	GCA_000621165_04876	Unannotated protein. (433 aa)

Your Current Organism:

Enterovibrio calviensis

NCBI taxonomy Id: 1121867
Other names: E. calviensis DSM 14347, Enterovibrio calviensis DSM 14347

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000621165_00239	GCA_000621165_00296	Unannotated protein.	Unannotated protein.	0.950
GCA_000621165_00239	GCA_000621165_00310	Unannotated protein.	Unannotated protein.	0.983
GCA_000621165_00239	GCA_000621165_00352	Unannotated protein.	Unannotated protein.	0.896
GCA_000621165_00239	GCA_000621165_00372	Unannotated protein.	Unannotated protein.	0.905
GCA_000621165_00239	GCA_000621165_00398	Unannotated protein.	Unannotated protein.	0.980
GCA_000621165_00239	GCA_000621165_00416	Unannotated protein.	Unannotated protein.	0.909
GCA_000621165_00239	GCA_000621165_00417	Unannotated protein.	Unannotated protein.	0.957
GCA_000621165_00239	GCA_000621165_00458	Unannotated protein.	Unannotated protein.	0.979
GCA_000621165_00239	GCA_000621165_00464	Unannotated protein.	Unannotated protein.	0.976
GCA_000621165_00239	GCA_000621165_00686	Unannotated protein.	Unannotated protein.	0.942
GCA_000621165_00239	GCA_000621165_00929	Unannotated protein.	Unannotated protein.	0.923
GCA_000621165_00239	GCA_000621165_01369	Unannotated protein.	Unannotated protein.	0.970
GCA_000621165_00239	GCA_000621165_01576	Unannotated protein.	Unannotated protein.	0.929
GCA_000621165_00239	GCA_000621165_01747	Unannotated protein.	Unannotated protein.	0.981
GCA_000621165_00239	GCA_000621165_01864	Unannotated protein.	Unannotated protein.	0.801
GCA_000621165_00239	GCA_000621165_01891	Unannotated protein.	Unannotated protein.	0.974
GCA_000621165_00239	GCA_000621165_01968	Unannotated protein.	Unannotated protein.	0.982
GCA_000621165_00239	GCA_000621165_02069	Unannotated protein.	Unannotated protein.	0.953
GCA_000621165_00239	GCA_000621165_02178	Unannotated protein.	Unannotated protein.	0.905
GCA_000621165_00239	GCA_000621165_02344	Unannotated protein.	Unannotated protein.	0.841