(41 nodes) Sulfur metabolism network (Enterovibrio calviensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000621165_04759	Unannotated protein. (318 aa)
	GCA_000621165_00098	Unannotated protein. (444 aa)
	GCA_000621165_00149	Unannotated protein. (330 aa)
	GCA_000621165_00150	Unannotated protein. (252 aa)
	GCA_000621165_00154	Unannotated protein. (208 aa)
	GCA_000621165_00155	Unannotated protein. (280 aa)
	GCA_000621165_00544	Unannotated protein. (111 aa)
	GCA_000621165_00579	Unannotated protein. (385 aa)
	GCA_000621165_00816	Unannotated protein. (367 aa)
	GCA_000621165_00817	Unannotated protein. (274 aa)
	GCA_000621165_01001	Unannotated protein. (322 aa)
	GCA_000621165_01261	Unannotated protein. (175 aa)
	GCA_000621165_01422	Unannotated protein. (327 aa)
	GCA_000621165_02222	Unannotated protein. (153 aa)
	GCA_000621165_02359	Unannotated protein. (282 aa)
	GCA_000621165_02458	Unannotated protein. (339 aa)
	GCA_000621165_02780	Unannotated protein. (356 aa)
	GCA_000621165_03046	Unannotated protein. (305 aa)
	GCA_000621165_03047	Unannotated protein. (469 aa)
	GCA_000621165_03062	Unannotated protein. (317 aa)
	GCA_000621165_03065	Unannotated protein. (310 aa)
	GCA_000621165_03383	Unannotated protein. (607 aa)
	GCA_000621165_03384	Unannotated protein. (572 aa)
	GCA_000621165_03385	Unannotated protein. (253 aa)
	GCA_000621165_03394	Unannotated protein. (264 aa)
	GCA_000621165_03403	Unannotated protein. (302 aa)
	GCA_000621165_03404	Unannotated protein. (477 aa)
	GCA_000621165_04840	Unannotated protein. (260 aa)
	GCA_000621165_03406	Unannotated protein. (206 aa)
	GCA_000621165_03465	Unannotated protein. (543 aa)
	GCA_000621165_03524	Unannotated protein. (134 aa)
	GCA_000621165_03596	Unannotated protein. (338 aa)
	GCA_000621165_03810	Unannotated protein. (110 aa)
	GCA_000621165_03879	Unannotated protein. (146 aa)
	GCA_000621165_03882	Unannotated protein. (280 aa)
	GCA_000621165_03911	Unannotated protein. (387 aa)
	GCA_000621165_04036	Unannotated protein. (172 aa)
	GCA_000621165_04311	Unannotated protein. (296 aa)
	GCA_000621165_04465	Unannotated protein. (145 aa)
	GCA_000621165_04514	Unannotated protein. (271 aa)
	GCA_000621165_04654	Unannotated protein. (148 aa)

Your Current Organism:

Enterovibrio calviensis

NCBI taxonomy Id: 1121867
Other names: E. calviensis DSM 14347, Enterovibrio calviensis DSM 14347

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000621165_00098	GCA_000621165_00154	Unannotated protein.	Unannotated protein.	0.582
GCA_000621165_00098	GCA_000621165_00155	Unannotated protein.	Unannotated protein.	0.622
GCA_000621165_00098	GCA_000621165_01261	Unannotated protein.	Unannotated protein.	0.406
GCA_000621165_00098	GCA_000621165_01422	Unannotated protein.	Unannotated protein.	0.695
GCA_000621165_00098	GCA_000621165_02359	Unannotated protein.	Unannotated protein.	0.634
GCA_000621165_00098	GCA_000621165_03046	Unannotated protein.	Unannotated protein.	0.602
GCA_000621165_00098	GCA_000621165_03047	Unannotated protein.	Unannotated protein.	0.580
GCA_000621165_00098	GCA_000621165_03383	Unannotated protein.	Unannotated protein.	0.684
GCA_000621165_00098	GCA_000621165_03384	Unannotated protein.	Unannotated protein.	0.730
GCA_000621165_00098	GCA_000621165_03385	Unannotated protein.	Unannotated protein.	0.719
GCA_000621165_00098	GCA_000621165_03394	Unannotated protein.	Unannotated protein.	0.729
GCA_000621165_00098	GCA_000621165_03403	Unannotated protein.	Unannotated protein.	0.602
GCA_000621165_00098	GCA_000621165_03404	Unannotated protein.	Unannotated protein.	0.580
GCA_000621165_00098	GCA_000621165_03406	Unannotated protein.	Unannotated protein.	0.602
GCA_000621165_00098	GCA_000621165_03810	Unannotated protein.	Unannotated protein.	0.712
GCA_000621165_00098	GCA_000621165_04036	Unannotated protein.	Unannotated protein.	0.406
GCA_000621165_00098	GCA_000621165_04465	Unannotated protein.	Unannotated protein.	0.627
GCA_000621165_00098	GCA_000621165_04654	Unannotated protein.	Unannotated protein.	0.406
GCA_000621165_00098	GCA_000621165_04840	Unannotated protein.	Unannotated protein.	0.671
GCA_000621165_00149	GCA_000621165_00150	Unannotated protein.	Unannotated protein.	0.993