(96 nodes) Mixed, incl. Pentose phosphate pathway, and Monosaccharide metabolic process network (Flexithrix dorotheae)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000379765_00304	Unannotated protein. (425 aa)
	GCA_000379765_00605	Unannotated protein. (953 aa)
	GCA_000379765_00631	Unannotated protein. (218 aa)
	GCA_000379765_00647	Unannotated protein. (344 aa)
	GCA_000379765_00655	Unannotated protein. (467 aa)
	GCA_000379765_00656	Unannotated protein. (345 aa)
	GCA_000379765_00657	Unannotated protein. (223 aa)
	GCA_000379765_00661	Unannotated protein. (550 aa)
	GCA_000379765_00662	Unannotated protein. (484 aa)
	GCA_000379765_00714	Unannotated protein. (643 aa)
	GCA_000379765_01026	Unannotated protein. (330 aa)
	GCA_000379765_01028	Unannotated protein. (360 aa)
	GCA_000379765_01075	Unannotated protein. (394 aa)
	GCA_000379765_01128	Unannotated protein. (336 aa)
	GCA_000379765_01130	Unannotated protein. (395 aa)
	GCA_000379765_01222	Unannotated protein. (364 aa)
	GCA_000379765_01223	Unannotated protein. (450 aa)
	GCA_000379765_01232	Unannotated protein. (355 aa)
	GCA_000379765_01377	Unannotated protein. (504 aa)
	GCA_000379765_01378	Unannotated protein. (233 aa)
	GCA_000379765_01379	Unannotated protein. (557 aa)
	GCA_000379765_01499	Unannotated protein. (397 aa)
	GCA_000379765_01510	Unannotated protein. (104 aa)
	GCA_000379765_01522	Unannotated protein. (310 aa)
	GCA_000379765_01523	Unannotated protein. (280 aa)
	GCA_000379765_01714	Unannotated protein. (253 aa)
	GCA_000379765_01764	Unannotated protein. (576 aa)
	GCA_000379765_01769	Unannotated protein. (324 aa)
	GCA_000379765_01772	Unannotated protein. (439 aa)
	GCA_000379765_01874	Unannotated protein. (247 aa)
	GCA_000379765_01933	Unannotated protein. (336 aa)
	GCA_000379765_01958	Unannotated protein. (276 aa)
	GCA_000379765_02221	Unannotated protein. (492 aa)
	GCA_000379765_02676	Unannotated protein. (340 aa)
	GCA_000379765_03105	Unannotated protein. (323 aa)
	GCA_000379765_03231	Unannotated protein. (405 aa)
	GCA_000379765_03489	Unannotated protein. (329 aa)
	GCA_000379765_03546	Unannotated protein. (337 aa)
	GCA_000379765_03547	Unannotated protein. (188 aa)
	GCA_000379765_03548	Unannotated protein. (374 aa)
	GCA_000379765_03549	Unannotated protein. (276 aa)
	GCA_000379765_03550	Unannotated protein. (234 aa)
	GCA_000379765_03649	Unannotated protein. (792 aa)
	GCA_000379765_03848	Unannotated protein. (341 aa)
	GCA_000379765_03868	Unannotated protein. (331 aa)
	GCA_000379765_03871	Unannotated protein. (291 aa)
	GCA_000379765_03872	Unannotated protein. (473 aa)
	GCA_000379765_03985	Unannotated protein. (274 aa)
	GCA_000379765_03986	Unannotated protein. (871 aa)
	GCA_000379765_03987	Unannotated protein. (335 aa)
	GCA_000379765_04073	Unannotated protein. (476 aa)
	GCA_000379765_04138	Unannotated protein. (550 aa)
	GCA_000379765_04251	Unannotated protein. (476 aa)
	GCA_000379765_04261	Unannotated protein. (332 aa)
	GCA_000379765_04278	Unannotated protein. (706 aa)
	GCA_000379765_04486	Unannotated protein. (257 aa)
	GCA_000379765_04487	Unannotated protein. (230 aa)
	GCA_000379765_04488	Unannotated protein. (212 aa)
	GCA_000379765_04489	Unannotated protein. (277 aa)
	GCA_000379765_04490	Unannotated protein. (255 aa)
	GCA_000379765_04679	Unannotated protein. (499 aa)
	GCA_000379765_04680	Unannotated protein. (482 aa)
	GCA_000379765_04681	Unannotated protein. (1011 aa)
	GCA_000379765_04971	Unannotated protein. (375 aa)
	GCA_000379765_05124	Unannotated protein. (427 aa)
	GCA_000379765_05125	Unannotated protein. (470 aa)
	GCA_000379765_05126	Unannotated protein. (470 aa)
	GCA_000379765_05127	Unannotated protein. (60 aa)
	GCA_000379765_05186	Unannotated protein. (787 aa)
	GCA_000379765_05302	Unannotated protein. (418 aa)
	GCA_000379765_05303	Unannotated protein. (278 aa)
	GCA_000379765_05437	Unannotated protein. (375 aa)
	GCA_000379765_05529	Unannotated protein. (383 aa)
	GCA_000379765_05530	Unannotated protein. (497 aa)
	GCA_000379765_05531	Unannotated protein. (438 aa)
	GCA_000379765_05729	Unannotated protein. (218 aa)
	GCA_000379765_05886	Unannotated protein. (283 aa)
	GCA_000379765_06007	Unannotated protein. (369 aa)
	GCA_000379765_06116	Unannotated protein. (469 aa)
	GCA_000379765_06117	Unannotated protein. (505 aa)
	GCA_000379765_06321	Unannotated protein. (680 aa)
	GCA_000379765_06647	Unannotated protein. (902 aa)
	GCA_000379765_06649	Unannotated protein. (316 aa)
	GCA_000379765_06650	Unannotated protein. (277 aa)
	GCA_000379765_06651	Unannotated protein. (473 aa)
	GCA_000379765_06652	Unannotated protein. (254 aa)
	GCA_000379765_06760	Unannotated protein. (217 aa)
	GCA_000379765_06795	Unannotated protein. (216 aa)
	GCA_000379765_06839	Unannotated protein. (350 aa)
	GCA_000379765_06840	Unannotated protein. (387 aa)
	GCA_000379765_06904	Unannotated protein. (142 aa)
	GCA_000379765_07077	Unannotated protein. (204 aa)
	GCA_000379765_07096	Unannotated protein. (303 aa)
	GCA_000379765_07097	Unannotated protein. (279 aa)
	GCA_000379765_07098	Unannotated protein. (270 aa)
	GCA_000379765_07151	Unannotated protein. (666 aa)

Your Current Organism:

Flexithrix dorotheae

NCBI taxonomy Id: 1121904
Other names: F. dorotheae DSM 6795, Flexithrix dorotheae DSM 6795

Send network to Cytoscape

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000379765_00304	GCA_000379765_00631	Unannotated protein.	Unannotated protein.	0.600
GCA_000379765_00304	GCA_000379765_00657	Unannotated protein.	Unannotated protein.	0.699
GCA_000379765_00304	GCA_000379765_01026	Unannotated protein.	Unannotated protein.	0.975
GCA_000379765_00304	GCA_000379765_01028	Unannotated protein.	Unannotated protein.	0.956
GCA_000379765_00304	GCA_000379765_01128	Unannotated protein.	Unannotated protein.	0.455
GCA_000379765_00304	GCA_000379765_01130	Unannotated protein.	Unannotated protein.	0.991
GCA_000379765_00304	GCA_000379765_01522	Unannotated protein.	Unannotated protein.	0.765
GCA_000379765_00304	GCA_000379765_01714	Unannotated protein.	Unannotated protein.	0.972
GCA_000379765_00304	GCA_000379765_01772	Unannotated protein.	Unannotated protein.	0.841
GCA_000379765_00304	GCA_000379765_01933	Unannotated protein.	Unannotated protein.	0.807
GCA_000379765_00304	GCA_000379765_01958	Unannotated protein.	Unannotated protein.	0.939
GCA_000379765_00304	GCA_000379765_03105	Unannotated protein.	Unannotated protein.	0.816
GCA_000379765_00304	GCA_000379765_03489	Unannotated protein.	Unannotated protein.	0.967
GCA_000379765_00304	GCA_000379765_03549	Unannotated protein.	Unannotated protein.	0.639
GCA_000379765_00304	GCA_000379765_03871	Unannotated protein.	Unannotated protein.	0.528
GCA_000379765_00304	GCA_000379765_03986	Unannotated protein.	Unannotated protein.	0.698
GCA_000379765_00304	GCA_000379765_03987	Unannotated protein.	Unannotated protein.	0.455
GCA_000379765_00304	GCA_000379765_04073	Unannotated protein.	Unannotated protein.	0.951
GCA_000379765_00304	GCA_000379765_04138	Unannotated protein.	Unannotated protein.	0.972
GCA_000379765_00304	GCA_000379765_04251	Unannotated protein.	Unannotated protein.	0.985