(58 nodes) Oxidative phosphorylation network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_02937	Unannotated protein. (169 aa)
	GCA_000420705_02940	Unannotated protein. (110 aa)
	GCA_000420705_02941	Unannotated protein. (648 aa)
	GCA_000420705_02942	Unannotated protein. (489 aa)
	GCA_000420705_02943	Unannotated protein. (484 aa)
	GCA_000420705_03010	Unannotated protein. (442 aa)
	GCA_000420705_03737	Unannotated protein. (157 aa)
	GCA_000420705_03742	Unannotated protein. (428 aa)
	GCA_000420705_03908	Unannotated protein. (354 aa)
	GCA_000420705_03909	Unannotated protein. (86 aa)
	GCA_000420705_03910	Unannotated protein. (165 aa)
	GCA_000420705_03911	Unannotated protein. (186 aa)
	GCA_000420705_03912	Unannotated protein. (527 aa)
	GCA_000420705_03913	Unannotated protein. (296 aa)
	GCA_000420705_03916	Unannotated protein. (194 aa)
	GCA_000420705_04198	Unannotated protein. (1004 aa)
	GCA_000420705_04221	Unannotated protein. (144 aa)
	GCA_000420705_04317	Unannotated protein. (261 aa)
	GCA_000420705_04742	Unannotated protein. (521 aa)
	GCA_000420705_04981	Unannotated protein. (542 aa)
	GCA_000420705_02316	Unannotated protein. (644 aa)
	GCA_000420705_02033	Unannotated protein. (114 aa)
	GCA_000420705_02317	Unannotated protein. (261 aa)
	GCA_000420705_02522	Unannotated protein. (245 aa)
	GCA_000420705_02315	Unannotated protein. (225 aa)
	GCA_000420705_01661	Unannotated protein. (215 aa)
	GCA_000420705_01520	Unannotated protein. (214 aa)
	GCA_000420705_01467	Unannotated protein. (660 aa)
	GCA_000420705_01334	Unannotated protein. (777 aa)
	GCA_000420705_01067	Unannotated protein. (113 aa)
	GCA_000420705_01066	Unannotated protein. (259 aa)
	GCA_000420705_01065	Unannotated protein. (197 aa)
	GCA_000420705_01064	Unannotated protein. (283 aa)
	GCA_000420705_01063	Unannotated protein. (361 aa)
	GCA_000420705_01062	Unannotated protein. (620 aa)
	GCA_000420705_01061	Unannotated protein. (353 aa)
	GCA_000420705_00927	Unannotated protein. (194 aa)
	GCA_000420705_00890	Unannotated protein. (440 aa)
	GCA_000420705_00714	Unannotated protein. (522 aa)
	GCA_000420705_00320	Unannotated protein. (708 aa)
	GCA_000420705_00250	Unannotated protein. (444 aa)
	GCA_000420705_00090	Unannotated protein. (83 aa)
	GCA_000420705_02738	Unannotated protein. (501 aa)
	GCA_000420705_02853	Unannotated protein. (990 aa)
	GCA_000420705_02918	Unannotated protein. (460 aa)
	GCA_000420705_02921	Unannotated protein. (104 aa)
	GCA_000420705_02928	Unannotated protein. (129 aa)
	GCA_000420705_02929	Unannotated protein. (184 aa)
	GCA_000420705_02930	Unannotated protein. (188 aa)
	GCA_000420705_02931	Unannotated protein. (422 aa)
	GCA_000420705_02932	Unannotated protein. (189 aa)
	GCA_000420705_02933	Unannotated protein. (446 aa)
	GCA_000420705_02934	Unannotated protein. (333 aa)
	GCA_000420705_02935	Unannotated protein. (365 aa)
	GCA_000420705_02936	Unannotated protein. (192 aa)
	GCA_000420705_02607	Unannotated protein. (950 aa)
	GCA_000420705_02625	Unannotated protein. (501 aa)
	GCA_000420705_02624	Unannotated protein. (81 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00090	GCA_000420705_00714	Unannotated protein.	Unannotated protein.	0.965
GCA_000420705_00090	GCA_000420705_00890	Unannotated protein.	Unannotated protein.	0.830
GCA_000420705_00090	GCA_000420705_01061	Unannotated protein.	Unannotated protein.	0.996
GCA_000420705_00090	GCA_000420705_01063	Unannotated protein.	Unannotated protein.	0.818
GCA_000420705_00090	GCA_000420705_01064	Unannotated protein.	Unannotated protein.	0.953
GCA_000420705_00090	GCA_000420705_01065	Unannotated protein.	Unannotated protein.	0.977
GCA_000420705_00090	GCA_000420705_01066	Unannotated protein.	Unannotated protein.	0.976
GCA_000420705_00090	GCA_000420705_01067	Unannotated protein.	Unannotated protein.	0.861
GCA_000420705_00090	GCA_000420705_01467	Unannotated protein.	Unannotated protein.	0.830
GCA_000420705_00090	GCA_000420705_01520	Unannotated protein.	Unannotated protein.	0.975
GCA_000420705_00090	GCA_000420705_01661	Unannotated protein.	Unannotated protein.	0.568
GCA_000420705_00090	GCA_000420705_02033	Unannotated protein.	Unannotated protein.	0.712
GCA_000420705_00090	GCA_000420705_02316	Unannotated protein.	Unannotated protein.	0.536
GCA_000420705_00090	GCA_000420705_02317	Unannotated protein.	Unannotated protein.	0.528
GCA_000420705_00090	GCA_000420705_02522	Unannotated protein.	Unannotated protein.	0.568
GCA_000420705_00090	GCA_000420705_02607	Unannotated protein.	Unannotated protein.	0.830
GCA_000420705_00090	GCA_000420705_02624	Unannotated protein.	Unannotated protein.	0.454
GCA_000420705_00090	GCA_000420705_02625	Unannotated protein.	Unannotated protein.	0.573
GCA_000420705_00090	GCA_000420705_02853	Unannotated protein.	Unannotated protein.	0.830
GCA_000420705_00090	GCA_000420705_02928	Unannotated protein.	Unannotated protein.	0.860