(24 nodes) Arginine biosynthesis network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_02450	Unannotated protein. (395 aa)
	GCA_000420705_00297	Unannotated protein. (297 aa)
	GCA_000420705_01445	Unannotated protein. (413 aa)
	GCA_000420705_01705	Unannotated protein. (172 aa)
	GCA_000420705_01763	Unannotated protein. (409 aa)
	GCA_000420705_01902	Unannotated protein. (234 aa)
	GCA_000420705_02443	Unannotated protein. (314 aa)
	GCA_000420705_02448	Unannotated protein. (387 aa)
	GCA_000420705_02449	Unannotated protein. (326 aa)
	GCA_000420705_02451	Unannotated protein. (193 aa)
	GCA_000420705_02452	Unannotated protein. (260 aa)
	GCA_000420705_02453	Unannotated protein. (356 aa)
	GCA_000420705_02454	Unannotated protein. (434 aa)
	GCA_000420705_02863	Unannotated protein. (411 aa)
	GCA_000420705_03216	Unannotated protein. (571 aa)
	GCA_000420705_03218	Unannotated protein. (245 aa)
	GCA_000420705_03457	Unannotated protein. (729 aa)
	GCA_000420705_03879	Unannotated protein. (162 aa)
	GCA_000420705_04020	Unannotated protein. (474 aa)
	GCA_000420705_04349	Unannotated protein. (171 aa)
	GCA_000420705_04408	Unannotated protein. (409 aa)
	GCA_000420705_04423	Unannotated protein. (429 aa)
	GCA_000420705_04511	Unannotated protein. (324 aa)
	GCA_000420705_04647	Unannotated protein. (368 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00297	GCA_000420705_04020	Unannotated protein.	Unannotated protein.	0.868
GCA_000420705_00297	GCA_000420705_04423	Unannotated protein.	Unannotated protein.	0.869
GCA_000420705_01445	GCA_000420705_01763	Unannotated protein.	Unannotated protein.	0.898
GCA_000420705_01445	GCA_000420705_02450	Unannotated protein.	Unannotated protein.	0.889
GCA_000420705_01445	GCA_000420705_02863	Unannotated protein.	Unannotated protein.	0.882
GCA_000420705_01445	GCA_000420705_04647	Unannotated protein.	Unannotated protein.	0.900
GCA_000420705_01763	GCA_000420705_01445	Unannotated protein.	Unannotated protein.	0.898
GCA_000420705_01763	GCA_000420705_02450	Unannotated protein.	Unannotated protein.	0.905
GCA_000420705_01763	GCA_000420705_02863	Unannotated protein.	Unannotated protein.	0.890
GCA_000420705_01763	GCA_000420705_04647	Unannotated protein.	Unannotated protein.	0.893
GCA_000420705_02443	GCA_000420705_02448	Unannotated protein.	Unannotated protein.	0.975
GCA_000420705_02443	GCA_000420705_02449	Unannotated protein.	Unannotated protein.	0.991
GCA_000420705_02443	GCA_000420705_02450	Unannotated protein.	Unannotated protein.	0.996
GCA_000420705_02443	GCA_000420705_02451	Unannotated protein.	Unannotated protein.	0.921
GCA_000420705_02443	GCA_000420705_02452	Unannotated protein.	Unannotated protein.	0.992
GCA_000420705_02443	GCA_000420705_02453	Unannotated protein.	Unannotated protein.	0.944
GCA_000420705_02443	GCA_000420705_02454	Unannotated protein.	Unannotated protein.	0.986
GCA_000420705_02443	GCA_000420705_04511	Unannotated protein.	Unannotated protein.	0.662
GCA_000420705_02448	GCA_000420705_02443	Unannotated protein.	Unannotated protein.	0.975
GCA_000420705_02448	GCA_000420705_02449	Unannotated protein.	Unannotated protein.	0.997