(103 nodes) Purine metabolism network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_00026	Unannotated protein. (322 aa)
	GCA_000420705_00233	Unannotated protein. (287 aa)
	GCA_000420705_00296	Unannotated protein. (1011 aa)
	GCA_000420705_00297	Unannotated protein. (297 aa)
	GCA_000420705_00298	Unannotated protein. (310 aa)
	GCA_000420705_00301	Unannotated protein. (408 aa)
	GCA_000420705_00302	Unannotated protein. (253 aa)
	GCA_000420705_00303	Unannotated protein. (500 aa)
	GCA_000420705_00304	Unannotated protein. (366 aa)
	GCA_000420705_00317	Unannotated protein. (415 aa)
	GCA_000420705_00500	Unannotated protein. (95 aa)
	GCA_000420705_00520	Unannotated protein. (218 aa)
	GCA_000420705_00600	Unannotated protein. (194 aa)
	GCA_000420705_00674	Unannotated protein. (303 aa)
	GCA_000420705_00748	Unannotated protein. (493 aa)
	GCA_000420705_00751	Unannotated protein. (279 aa)
	GCA_000420705_00763	Unannotated protein. (194 aa)
	GCA_000420705_00874	Unannotated protein. (443 aa)
	GCA_000420705_00984	Unannotated protein. (247 aa)
	GCA_000420705_00986	Unannotated protein. (375 aa)
	GCA_000420705_00995	Unannotated protein. (254 aa)
	GCA_000420705_00996	Unannotated protein. (307 aa)
	GCA_000420705_01028	Unannotated protein. (196 aa)
	GCA_000420705_01129	Unannotated protein. (163 aa)
	GCA_000420705_01223	Unannotated protein. (238 aa)
	GCA_000420705_01243	Unannotated protein. (735 aa)
	GCA_000420705_01246	Unannotated protein. (423 aa)
	GCA_000420705_01335	Unannotated protein. (332 aa)
	GCA_000420705_01379	Unannotated protein. (293 aa)
	GCA_000420705_01419	Unannotated protein. (93 aa)
	GCA_000420705_01489	Unannotated protein. (290 aa)
	GCA_000420705_01598	Unannotated protein. (394 aa)
	GCA_000420705_01708	Unannotated protein. (207 aa)
	GCA_000420705_01847	Unannotated protein. (153 aa)
	GCA_000420705_01848	Unannotated protein. (416 aa)
	GCA_000420705_01991	Unannotated protein. (231 aa)
	GCA_000420705_01992	Unannotated protein. (326 aa)
	GCA_000420705_01993	Unannotated protein. (778 aa)
	GCA_000420705_02000	Unannotated protein. (257 aa)
	GCA_000420705_02034	Unannotated protein. (375 aa)
	GCA_000420705_02057	Unannotated protein. (304 aa)
	GCA_000420705_02098	Unannotated protein. (246 aa)
	GCA_000420705_02123	Unannotated protein. (470 aa)
	GCA_000420705_02129	Unannotated protein. (510 aa)
	GCA_000420705_02152	Unannotated protein. (429 aa)
	GCA_000420705_02153	Unannotated protein. (313 aa)
	GCA_000420705_02167	Unannotated protein. (158 aa)
	GCA_000420705_02203	Unannotated protein. (150 aa)
	GCA_000420705_02226	Unannotated protein. (184 aa)
	GCA_000420705_02254	Unannotated protein. (210 aa)
	GCA_000420705_02255	Unannotated protein. (327 aa)
	GCA_000420705_02256	Unannotated protein. (744 aa)
	GCA_000420705_02355	Unannotated protein. (276 aa)
	GCA_000420705_02437	Unannotated protein. (272 aa)
	GCA_000420705_02470	Unannotated protein. (226 aa)
	GCA_000420705_02485	Unannotated protein. (442 aa)
	GCA_000420705_02493	Unannotated protein. (176 aa)
	GCA_000420705_02497	Unannotated protein. (319 aa)
	GCA_000420705_02510	Unannotated protein. (207 aa)
	GCA_000420705_02511	Unannotated protein. (179 aa)
	GCA_000420705_02516	Unannotated protein. (261 aa)
	GCA_000420705_02520	Unannotated protein. (227 aa)
	GCA_000420705_02597	Unannotated protein. (479 aa)
	GCA_000420705_02627	Unannotated protein. (309 aa)
	GCA_000420705_02756	Unannotated protein. (348 aa)
	GCA_000420705_02774	Unannotated protein. (187 aa)
	GCA_000420705_02782	Unannotated protein. (552 aa)
	GCA_000420705_02922	Unannotated protein. (231 aa)
	GCA_000420705_02963	Unannotated protein. (139 aa)
	GCA_000420705_02984	Unannotated protein. (516 aa)
	GCA_000420705_03174	Unannotated protein. (176 aa)
	GCA_000420705_03175	Unannotated protein. (342 aa)
	GCA_000420705_03176	Unannotated protein. (757 aa)
	GCA_000420705_03216	Unannotated protein. (571 aa)
	GCA_000420705_03218	Unannotated protein. (245 aa)
	GCA_000420705_03256	Unannotated protein. (308 aa)
	GCA_000420705_03385	Unannotated protein. (170 aa)
	GCA_000420705_03391	Unannotated protein. (920 aa)
	GCA_000420705_03401	Unannotated protein. (875 aa)
	GCA_000420705_03428	Unannotated protein. (261 aa)
	GCA_000420705_03598	Unannotated protein. (188 aa)
	GCA_000420705_03627	Unannotated protein. (793 aa)
	GCA_000420705_03671	Unannotated protein. (750 aa)
	GCA_000420705_03672	Unannotated protein. (345 aa)
	GCA_000420705_03673	Unannotated protein. (342 aa)
	GCA_000420705_03789	Unannotated protein. (138 aa)
	GCA_000420705_03847	Unannotated protein. (461 aa)
	GCA_000420705_03860	Unannotated protein. (501 aa)
	GCA_000420705_03979	Unannotated protein. (225 aa)
	GCA_000420705_03997	Unannotated protein. (279 aa)
	GCA_000420705_04027	Unannotated protein. (101 aa)
	GCA_000420705_04229	Unannotated protein. (444 aa)
	GCA_000420705_04240	Unannotated protein. (279 aa)
	GCA_000420705_04261	Unannotated protein. (232 aa)
	GCA_000420705_04366	Unannotated protein. (319 aa)
	GCA_000420705_04385	Unannotated protein. (263 aa)
	GCA_000420705_04390	Unannotated protein. (314 aa)
	GCA_000420705_04499	Unannotated protein. (454 aa)
	GCA_000420705_04518	Unannotated protein. (177 aa)
	GCA_000420705_04619	Unannotated protein. (365 aa)
	GCA_000420705_04672	Unannotated protein. (578 aa)
	GCA_000420705_04863	Unannotated protein. (467 aa)
	GCA_000420705_04891	Unannotated protein. (365 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

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Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00296	GCA_000420705_00297	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00296	GCA_000420705_00298	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00296	GCA_000420705_00301	Unannotated protein.	Unannotated protein.	0.995
GCA_000420705_00296	GCA_000420705_00302	Unannotated protein.	Unannotated protein.	0.996
GCA_000420705_00296	GCA_000420705_00303	Unannotated protein.	Unannotated protein.	0.991
GCA_000420705_00296	GCA_000420705_00304	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00296	GCA_000420705_00748	Unannotated protein.	Unannotated protein.	0.689
GCA_000420705_00296	GCA_000420705_01246	Unannotated protein.	Unannotated protein.	0.806
GCA_000420705_00296	GCA_000420705_01847	Unannotated protein.	Unannotated protein.	0.931
GCA_000420705_00296	GCA_000420705_01848	Unannotated protein.	Unannotated protein.	0.962
GCA_000420705_00296	GCA_000420705_02129	Unannotated protein.	Unannotated protein.	0.916
GCA_000420705_00296	GCA_000420705_02516	Unannotated protein.	Unannotated protein.	0.494
GCA_000420705_00296	GCA_000420705_02520	Unannotated protein.	Unannotated protein.	0.863
GCA_000420705_00296	GCA_000420705_02984	Unannotated protein.	Unannotated protein.	0.980
GCA_000420705_00296	GCA_000420705_04499	Unannotated protein.	Unannotated protein.	0.945
GCA_000420705_00297	GCA_000420705_00296	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00297	GCA_000420705_00298	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00297	GCA_000420705_00301	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00297	GCA_000420705_00302	Unannotated protein.	Unannotated protein.	0.997
GCA_000420705_00297	GCA_000420705_00303	Unannotated protein.	Unannotated protein.	0.998