(37 nodes) Alanine, aspartate and glutamate metabolism network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_04647	Unannotated protein. (368 aa)
	GCA_000420705_04020	Unannotated protein. (474 aa)
	GCA_000420705_03848	Unannotated protein. (271 aa)
	GCA_000420705_03617	Unannotated protein. (468 aa)
	GCA_000420705_03457	Unannotated protein. (729 aa)
	GCA_000420705_03378	Unannotated protein. (309 aa)
	GCA_000420705_03377	Unannotated protein. (327 aa)
	GCA_000420705_02926	Unannotated protein. (556 aa)
	GCA_000420705_02863	Unannotated protein. (411 aa)
	GCA_000420705_02655	Unannotated protein. (304 aa)
	GCA_000420705_02550	Unannotated protein. (638 aa)
	GCA_000420705_02454	Unannotated protein. (434 aa)
	GCA_000420705_02450	Unannotated protein. (395 aa)
	GCA_000420705_02447	Unannotated protein. (358 aa)
	GCA_000420705_02445	Unannotated protein. (1076 aa)
	GCA_000420705_02004	Unannotated protein. (375 aa)
	GCA_000420705_01978	Unannotated protein. (352 aa)
	GCA_000420705_01845	Unannotated protein. (326 aa)
	GCA_000420705_01763	Unannotated protein. (409 aa)
	GCA_000420705_01447	Unannotated protein. (408 aa)
	GCA_000420705_01445	Unannotated protein. (413 aa)
	GCA_000420705_01389	Unannotated protein. (466 aa)
	GCA_000420705_01324	Unannotated protein. (1508 aa)
	GCA_000420705_01323	Unannotated protein. (489 aa)
	GCA_000420705_01246	Unannotated protein. (423 aa)
	GCA_000420705_00876	Unannotated protein. (380 aa)
	GCA_000420705_00715	Unannotated protein. (292 aa)
	GCA_000420705_00329	Unannotated protein. (260 aa)
	GCA_000420705_00303	Unannotated protein. (500 aa)
	GCA_000420705_00297	Unannotated protein. (297 aa)
	GCA_000420705_04137	Unannotated protein. (611 aa)
	GCA_000420705_04408	Unannotated protein. (409 aa)
	GCA_000420705_04423	Unannotated protein. (429 aa)
	GCA_000420705_04499	Unannotated protein. (454 aa)
	GCA_000420705_04783	Unannotated protein. (277 aa)
	GCA_000420705_04784	Unannotated protein. (359 aa)
	GCA_000420705_04785	Unannotated protein. (344 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00297	GCA_000420705_00303	Unannotated protein.	Unannotated protein.	0.998
GCA_000420705_00297	GCA_000420705_01246	Unannotated protein.	Unannotated protein.	0.619
GCA_000420705_00297	GCA_000420705_01845	Unannotated protein.	Unannotated protein.	0.511
GCA_000420705_00297	GCA_000420705_02445	Unannotated protein.	Unannotated protein.	0.965
GCA_000420705_00297	GCA_000420705_02447	Unannotated protein.	Unannotated protein.	0.967
GCA_000420705_00297	GCA_000420705_04020	Unannotated protein.	Unannotated protein.	0.868
GCA_000420705_00297	GCA_000420705_04137	Unannotated protein.	Unannotated protein.	0.903
GCA_000420705_00297	GCA_000420705_04423	Unannotated protein.	Unannotated protein.	0.869
GCA_000420705_00297	GCA_000420705_04499	Unannotated protein.	Unannotated protein.	0.923
GCA_000420705_00303	GCA_000420705_00297	Unannotated protein.	Unannotated protein.	0.998
GCA_000420705_00303	GCA_000420705_01246	Unannotated protein.	Unannotated protein.	0.814
GCA_000420705_00303	GCA_000420705_01323	Unannotated protein.	Unannotated protein.	0.885
GCA_000420705_00303	GCA_000420705_01324	Unannotated protein.	Unannotated protein.	0.929
GCA_000420705_00303	GCA_000420705_01845	Unannotated protein.	Unannotated protein.	0.697
GCA_000420705_00303	GCA_000420705_01978	Unannotated protein.	Unannotated protein.	0.488
GCA_000420705_00303	GCA_000420705_02445	Unannotated protein.	Unannotated protein.	0.986
GCA_000420705_00303	GCA_000420705_02447	Unannotated protein.	Unannotated protein.	0.978
GCA_000420705_00303	GCA_000420705_02450	Unannotated protein.	Unannotated protein.	0.587
GCA_000420705_00303	GCA_000420705_02550	Unannotated protein.	Unannotated protein.	0.544
GCA_000420705_00303	GCA_000420705_03457	Unannotated protein.	Unannotated protein.	0.875