(107 nodes) Carbon metabolism network (Hymenobacter norwichensis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	GCA_000420705_01556	Unannotated protein. (303 aa)
	GCA_000420705_04750	Unannotated protein. (499 aa)
	GCA_000420705_04749	Unannotated protein. (505 aa)
	GCA_000420705_04748	Unannotated protein. (242 aa)
	GCA_000420705_04747	Unannotated protein. (249 aa)
	GCA_000420705_04695	Unannotated protein. (133 aa)
	GCA_000420705_04587	Unannotated protein. (585 aa)
	GCA_000420705_04586	Unannotated protein. (214 aa)
	GCA_000420705_04574	Unannotated protein. (537 aa)
	GCA_000420705_04423	Unannotated protein. (429 aa)
	GCA_000420705_04397	Unannotated protein. (334 aa)
	GCA_000420705_04392	Unannotated protein. (183 aa)
	GCA_000420705_04378	Unannotated protein. (296 aa)
	GCA_000420705_04334	Unannotated protein. (503 aa)
	GCA_000420705_04300	Unannotated protein. (528 aa)
	GCA_000420705_04272	Unannotated protein. (467 aa)
	GCA_000420705_04225	Unannotated protein. (430 aa)
	GCA_000420705_04223	Unannotated protein. (143 aa)
	GCA_000420705_04164	Unannotated protein. (392 aa)
	GCA_000420705_04139	Unannotated protein. (223 aa)
	GCA_000420705_04118	Unannotated protein. (318 aa)
	GCA_000420705_04044	Unannotated protein. (254 aa)
	GCA_000420705_04020	Unannotated protein. (474 aa)
	GCA_000420705_04018	Unannotated protein. (595 aa)
	GCA_000420705_04016	Unannotated protein. (802 aa)
	GCA_000420705_03936	Unannotated protein. (243 aa)
	GCA_000420705_03922	Unannotated protein. (299 aa)
	GCA_000420705_03785	Unannotated protein. (468 aa)
	GCA_000420705_03775	Unannotated protein. (557 aa)
	GCA_000420705_03774	Unannotated protein. (948 aa)
	GCA_000420705_03761	Unannotated protein. (971 aa)
	GCA_000420705_03718	Unannotated protein. (383 aa)
	GCA_000420705_03611	Unannotated protein. (696 aa)
	GCA_000420705_03609	Unannotated protein. (401 aa)
	GCA_000420705_03587	Unannotated protein. (226 aa)
	GCA_000420705_03476	Unannotated protein. (402 aa)
	GCA_000420705_03430	Unannotated protein. (541 aa)
	GCA_000420705_03420	Unannotated protein. (315 aa)
	GCA_000420705_03302	Unannotated protein. (170 aa)
	GCA_000420705_03272	Unannotated protein. (335 aa)
	GCA_000420705_03146	Unannotated protein. (324 aa)
	GCA_000420705_03080	Unannotated protein. (338 aa)
	GCA_000420705_03031	Unannotated protein. (272 aa)
	GCA_000420705_02888	Unannotated protein. (318 aa)
	GCA_000420705_02854	Unannotated protein. (420 aa)
	GCA_000420705_02789	Unannotated protein. (466 aa)
	GCA_000420705_02785	Unannotated protein. (352 aa)
	GCA_000420705_02715	Unannotated protein. (360 aa)
	GCA_000420705_02704	Unannotated protein. (136 aa)
	GCA_000420705_02627	Unannotated protein. (309 aa)
	GCA_000420705_02597	Unannotated protein. (479 aa)
	GCA_000420705_02576	Unannotated protein. (556 aa)
	GCA_000420705_02555	Unannotated protein. (306 aa)
	GCA_000420705_02554	Unannotated protein. (279 aa)
	GCA_000420705_02551	Unannotated protein. (167 aa)
	GCA_000420705_02487	Unannotated protein. (313 aa)
	GCA_000420705_02457	Unannotated protein. (464 aa)
	GCA_000420705_02390	Unannotated protein. (399 aa)
	GCA_000420705_02372	Unannotated protein. (416 aa)
	GCA_000420705_02370	Unannotated protein. (294 aa)
	GCA_000420705_02317	Unannotated protein. (261 aa)
	GCA_000420705_02316	Unannotated protein. (644 aa)
	GCA_000420705_02315	Unannotated protein. (225 aa)
	GCA_000420705_02278	Unannotated protein. (501 aa)
	GCA_000420705_02232	Unannotated protein. (234 aa)
	GCA_000420705_02217	Unannotated protein. (460 aa)
	GCA_000420705_02132	Unannotated protein. (218 aa)
	GCA_000420705_02084	Unannotated protein. (1149 aa)
	GCA_000420705_02042	Unannotated protein. (492 aa)
	GCA_000420705_02018	Unannotated protein. (354 aa)
	GCA_000420705_01945	Unannotated protein. (340 aa)
	GCA_000420705_01942	Unannotated protein. (218 aa)
	GCA_000420705_01941	Unannotated protein. (335 aa)
	GCA_000420705_01923	Unannotated protein. (504 aa)
	GCA_000420705_01837	Unannotated protein. (394 aa)
	GCA_000420705_01830	Unannotated protein. (683 aa)
	GCA_000420705_01829	Unannotated protein. (945 aa)
	GCA_000420705_01776	Unannotated protein. (764 aa)
	GCA_000420705_01703	Unannotated protein. (86 aa)
	GCA_000420705_01659	Unannotated protein. (521 aa)
	GCA_000420705_01638	Unannotated protein. (422 aa)
	GCA_000420705_01569	Unannotated protein. (298 aa)
	GCA_000420705_01561	Unannotated protein. (429 aa)
	GCA_000420705_01551	Unannotated protein. (410 aa)
	GCA_000420705_01546	Unannotated protein. (1162 aa)
	GCA_000420705_01500	Unannotated protein. (187 aa)
	GCA_000420705_01460	Unannotated protein. (641 aa)
	GCA_000420705_01430	Unannotated protein. (338 aa)
	GCA_000420705_01377	Unannotated protein. (313 aa)
	GCA_000420705_01367	Unannotated protein. (175 aa)
	GCA_000420705_01366	Unannotated protein. (448 aa)
	GCA_000420705_01325	Unannotated protein. (394 aa)
	GCA_000420705_01302	Unannotated protein. (410 aa)
	GCA_000420705_01296	Unannotated protein. (327 aa)
	GCA_000420705_01281	Unannotated protein. (147 aa)
	GCA_000420705_01139	Unannotated protein. (633 aa)
	GCA_000420705_01034	Unannotated protein. (366 aa)
	GCA_000420705_00994	Unannotated protein. (594 aa)
	GCA_000420705_00993	Unannotated protein. (712 aa)
	GCA_000420705_00867	Unannotated protein. (296 aa)
	GCA_000420705_00654	Unannotated protein. (423 aa)
	GCA_000420705_00499	Unannotated protein. (462 aa)
	GCA_000420705_00495	Unannotated protein. (301 aa)
	GCA_000420705_00479	Unannotated protein. (262 aa)
	GCA_000420705_00359	Unannotated protein. (756 aa)
	GCA_000420705_00356	Unannotated protein. (126 aa)
	GCA_000420705_00244	Unannotated protein. (339 aa)

Your Current Organism:

Hymenobacter norwichensis

NCBI taxonomy Id: 1121957
Other names: H. norwichensis DSM 15439, Hymenobacter norwichensis DSM 15439

Send network to Cytoscape

Export your current network:

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... as a high-resolution bitmap:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
GCA_000420705_00244	GCA_000420705_03080	Unannotated protein.	Unannotated protein.	0.595
GCA_000420705_00244	GCA_000420705_03302	Unannotated protein.	Unannotated protein.	0.717
GCA_000420705_00356	GCA_000420705_00359	Unannotated protein.	Unannotated protein.	0.587
GCA_000420705_00356	GCA_000420705_01034	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00356	GCA_000420705_01296	Unannotated protein.	Unannotated protein.	0.730
GCA_000420705_00356	GCA_000420705_01367	Unannotated protein.	Unannotated protein.	0.544
GCA_000420705_00356	GCA_000420705_01556	Unannotated protein.	Unannotated protein.	0.743
GCA_000420705_00356	GCA_000420705_02018	Unannotated protein.	Unannotated protein.	0.509
GCA_000420705_00356	GCA_000420705_02042	Unannotated protein.	Unannotated protein.	0.782
GCA_000420705_00356	GCA_000420705_02217	Unannotated protein.	Unannotated protein.	0.865
GCA_000420705_00356	GCA_000420705_02457	Unannotated protein.	Unannotated protein.	0.973
GCA_000420705_00356	GCA_000420705_02789	Unannotated protein.	Unannotated protein.	0.880
GCA_000420705_00356	GCA_000420705_03611	Unannotated protein.	Unannotated protein.	0.495
GCA_000420705_00356	GCA_000420705_03761	Unannotated protein.	Unannotated protein.	0.999
GCA_000420705_00356	GCA_000420705_03774	Unannotated protein.	Unannotated protein.	0.915
GCA_000420705_00356	GCA_000420705_03775	Unannotated protein.	Unannotated protein.	0.782
GCA_000420705_00356	GCA_000420705_03785	Unannotated protein.	Unannotated protein.	0.974
GCA_000420705_00356	GCA_000420705_04020	Unannotated protein.	Unannotated protein.	0.857
GCA_000420705_00356	GCA_000420705_04118	Unannotated protein.	Unannotated protein.	0.681
GCA_000420705_00356	GCA_000420705_04164	Unannotated protein.	Unannotated protein.	0.709