(16 nodes) Mixed, incl. Polyamine binding, and ABC-type polyamine transporter activity network (Martelella mediterranea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ydcV_1	Inner membrane ABC transporter permease protein YdcV. (270 aa)
	ugpC_1	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily. (361 aa)
	potD_1	Spermidine/putrescine-binding periplasmic protein precursor. (351 aa)
	potB_1	Spermidine/putrescine transport system permease protein PotB. (276 aa)
	AQZ50336.1	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein. (341 aa)
	potH_1	Putrescine transport system permease protein PotH. (274 aa)
	ydcV_2	Inner membrane ABC transporter permease protein YdcV. (267 aa)
	potA_2	Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily. (343 aa)
	cocE_2	Cocaine esterase. (537 aa)
	phnT	Putative 2-aminoethylphosphonate import ATP-binding protein PhnT. (341 aa)
	thiB_2	Thiamine-binding periplasmic protein precursor. (350 aa)
	potB_2	Spermidine/putrescine transport system permease protein PotB. (562 aa)
	potA_4	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (372 aa)
	AQZ52251.1	ABC-type uncharacterized transport system, periplasmic component. (366 aa)
	potB_4	Spermidine/putrescine transport system permease protein PotB. (392 aa)
	ydcV_3	Inner membrane ABC transporter permease protein YdcV. (283 aa)

Your Current Organism:

Martelella mediterranea

NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AQZ50336.1	phnT	Mame_00962	Mame_02847	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Putative 2-aminoethylphosphonate import ATP-binding protein PhnT.	0.491
AQZ50336.1	potA_2	Mame_00962	Mame_00965	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Spermidine/putrescine import ATP-binding protein PotA; Belongs to the ABC transporter superfamily.	0.632
AQZ50336.1	potA_4	Mame_00962	Mame_02928	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.580
AQZ50336.1	potB_1	Mame_00962	Mame_00169	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Spermidine/putrescine transport system permease protein PotB.	0.769
AQZ50336.1	potB_2	Mame_00962	Mame_02849	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Spermidine/putrescine transport system permease protein PotB.	0.931
AQZ50336.1	potB_4	Mame_00962	Mame_02930	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Spermidine/putrescine transport system permease protein PotB.	0.680
AQZ50336.1	potH_1	Mame_00962	Mame_00963	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Putrescine transport system permease protein PotH.	0.841
AQZ50336.1	ugpC_1	Mame_00962	Mame_00167	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Sn-glycerol-3-phosphate import ATP-binding protein UgpC; Belongs to the ABC transporter superfamily.	0.497
AQZ50336.1	ydcV_1	Mame_00962	Mame_00166	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Inner membrane ABC transporter permease protein YdcV.	0.816
AQZ50336.1	ydcV_2	Mame_00962	Mame_00964	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Inner membrane ABC transporter permease protein YdcV.	0.862
AQZ50336.1	ydcV_3	Mame_00962	Mame_02931	Spermidine/putrescine ABC transporter periplasmic substrate-binding protein.	Inner membrane ABC transporter permease protein YdcV.	0.642
AQZ52251.1	potA_4	Mame_02929	Mame_02928	ABC-type uncharacterized transport system, periplasmic component.	Spermidine/putrescine import ATP-binding protein PotA; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.	0.926
AQZ52251.1	potB_1	Mame_02929	Mame_00169	ABC-type uncharacterized transport system, periplasmic component.	Spermidine/putrescine transport system permease protein PotB.	0.487
AQZ52251.1	potB_2	Mame_02929	Mame_02849	ABC-type uncharacterized transport system, periplasmic component.	Spermidine/putrescine transport system permease protein PotB.	0.886
AQZ52251.1	potB_4	Mame_02929	Mame_02930	ABC-type uncharacterized transport system, periplasmic component.	Spermidine/putrescine transport system permease protein PotB.	0.913
AQZ52251.1	potH_1	Mame_02929	Mame_00963	ABC-type uncharacterized transport system, periplasmic component.	Putrescine transport system permease protein PotH.	0.496
AQZ52251.1	ydcV_1	Mame_02929	Mame_00166	ABC-type uncharacterized transport system, periplasmic component.	Inner membrane ABC transporter permease protein YdcV.	0.504
AQZ52251.1	ydcV_2	Mame_02929	Mame_00964	ABC-type uncharacterized transport system, periplasmic component.	Inner membrane ABC transporter permease protein YdcV.	0.536
AQZ52251.1	ydcV_3	Mame_02929	Mame_02931	ABC-type uncharacterized transport system, periplasmic component.	Inner membrane ABC transporter permease protein YdcV.	0.918
cocE_2	phnT	Mame_02846	Mame_02847	Cocaine esterase.	Putative 2-aminoethylphosphonate import ATP-binding protein PhnT.	0.776