(16 nodes) Gfo/Idh/MocA-like oxidoreductase, C-terminal network (Martelella mediterranea)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ydgJ_2	Putative oxidoreductase YdgJ. (336 aa)
	afr_3	1,5-anhydro-D-fructose reductase. (384 aa)
	yteT_3	Putative oxidoreductase YteT precursor. (421 aa)
	yhhX	Putative oxidoreductase YhhX. (373 aa)
	iolG_1	Inositol 2-dehydrogenase. (359 aa)
	idhA	Inositol 2-dehydrogenase. (330 aa)
	ycjS	Putative oxidoreductase YcjS. (334 aa)
	ligC_2	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (359 aa)
	yteT_2	Putative oxidoreductase YteT precursor. (392 aa)
	ydgJ_1	Putative oxidoreductase YdgJ. (394 aa)
	afr_2	1,5-anhydro-D-fructose reductase. (333 aa)
	afr_1	1,5-anhydro-D-fructose reductase. (363 aa)
	yteT_1	Putative oxidoreductase YteT precursor. (371 aa)
	gfo_2	Glucose--fructose oxidoreductase precursor. (366 aa)
	ligC_1	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (334 aa)
	gfo_1	Glucose--fructose oxidoreductase precursor. (329 aa)

Your Current Organism:

Martelella mediterranea

NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
afr_1	gfo_2	Mame_00807	Mame_00307	1,5-anhydro-D-fructose reductase.	Glucose--fructose oxidoreductase precursor.	0.478
afr_1	ycjS	Mame_00807	Mame_01916	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YcjS.	0.609
afr_1	yhhX	Mame_00807	Mame_02508	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YhhX.	0.500
afr_1	yteT_2	Mame_00807	Mame_00925	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YteT precursor.	0.567
afr_1	yteT_3	Mame_00807	Mame_02684	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YteT precursor.	0.636
afr_3	iolG_1	Mame_03164	Mame_02497	1,5-anhydro-D-fructose reductase.	Inositol 2-dehydrogenase.	0.603
afr_3	ligC_2	Mame_03164	Mame_01701	1,5-anhydro-D-fructose reductase.	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.	0.581
afr_3	ydgJ_2	Mame_03164	Mame_01700	1,5-anhydro-D-fructose reductase.	Putative oxidoreductase YdgJ.	0.592
gfo_1	ligC_1	Mame_00011	Mame_00278	Glucose--fructose oxidoreductase precursor.	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.	0.635
gfo_1	yteT_3	Mame_00011	Mame_02684	Glucose--fructose oxidoreductase precursor.	Putative oxidoreductase YteT precursor.	0.478
gfo_2	afr_1	Mame_00307	Mame_00807	Glucose--fructose oxidoreductase precursor.	1,5-anhydro-D-fructose reductase.	0.478
gfo_2	ycjS	Mame_00307	Mame_01916	Glucose--fructose oxidoreductase precursor.	Putative oxidoreductase YcjS.	0.726
gfo_2	ydgJ_2	Mame_00307	Mame_01700	Glucose--fructose oxidoreductase precursor.	Putative oxidoreductase YdgJ.	0.486
gfo_2	yteT_3	Mame_00307	Mame_02684	Glucose--fructose oxidoreductase precursor.	Putative oxidoreductase YteT precursor.	0.466
iolG_1	afr_3	Mame_02497	Mame_03164	Inositol 2-dehydrogenase.	1,5-anhydro-D-fructose reductase.	0.603
iolG_1	ligC_1	Mame_02497	Mame_00278	Inositol 2-dehydrogenase.	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.	0.614
iolG_1	ycjS	Mame_02497	Mame_01916	Inositol 2-dehydrogenase.	Putative oxidoreductase YcjS.	0.630
iolG_1	ydgJ_2	Mame_02497	Mame_01700	Inositol 2-dehydrogenase.	Putative oxidoreductase YdgJ.	0.742
iolG_1	yteT_3	Mame_02497	Mame_02684	Inositol 2-dehydrogenase.	Putative oxidoreductase YteT precursor.	0.600
ligC_1	gfo_1	Mame_00278	Mame_00011	4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.	Glucose--fructose oxidoreductase precursor.	0.635