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amaB_1 amaB_1 argE_1 argE_1 argE_2 argE_2 dapE_1 dapE_1 amaB_2 amaB_2 yxeP yxeP dapE_2 dapE_2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
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experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
amaB_1N-carbamoyl-L-amino acid hydrolase. (410 aa)
argE_1Acetylornithine deacetylase. (385 aa)
argE_2Acetylornithine deacetylase. (365 aa)
dapE_1Succinyl-diaminopimelate desuccinylase. (462 aa)
amaB_2N-carbamoyl-L-amino acid hydrolase. (415 aa)
yxePPutative hydrolase YxeP. (387 aa)
dapE_2Succinyl-diaminopimelate desuccinylase; Catalyzes the hydrolysis of N-succinyl-L,L-diaminopimelic acid (SDAP), forming succinate and LL-2,6-diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls; Belongs to the peptidase M20A family. DapE subfamily. (395 aa)
Your Current Organism:
Martelella mediterranea
NCBI taxonomy Id: 1122214
Other names: M. mediterranea DSM 17316, Martelella mediterranea DSM 17316
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